Basic Information | |
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Taxon OID | 3300029319 Open in IMG/M |
Scaffold ID | Ga0183748_1010879 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3770 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Red Sea: TARA_032 | |||||||
Coordinates | Lat. (o) | 23.36 | Long. (o) | 37.2183 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F048278 | Metagenome | 148 | Y |
F071186 | Metagenome | 122 | Y |
F092884 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183748_101087910 | F048278 | N/A | MKDIIDVIVELSRMQGQAIDRAQAGLINTAVETAHDKWQTEKQKDNE |
Ga0183748_10108797 | F092884 | N/A | MTKKQLLDLIAEYPDDSEVVIEVHDTTLYEDLYDFTLDPIQWTRFNTETDNPMDSFDYKTMYELRLCPIKNEQ |
Ga0183748_10108799 | F071186 | N/A | MSNVDTSKTYWDNEGKYQEQYNAAWKALIPMSGEAENGWPEALRAISRIGYDYYNNGFCNLWRSWDDGDTVMDSYYEDMVEYLRHHIPSDMFKQLNEFLHDAKGYGNWSNQAGVIDRIIDHIMEGIMEDGLLEEELVS |
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