NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134606_10002067

Scaffold Ga0134606_10002067


Overview

Basic Information
Taxon OID3300029827 Open in IMG/M
Scaffold IDGa0134606_10002067 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBattelle Memorial Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8699
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Source Dataset Sampling Location
Location NameUSA: Barataria Bay
CoordinatesLat. (o)29.468Long. (o)-89.882Alt. (m)Depth (m).08 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097618Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0134606_100020677F097618AGGAGGMSEERAERLTEDTEVRCDVCRKTFPPSEEGKRCPECGIGRIWLMEKAA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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