NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302176_10029464

Scaffold Ga0302176_10029464


Overview

Basic Information
Taxon OID3300030057 Open in IMG/M
Scaffold IDGa0302176_10029464 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2086
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029575Metagenome / Metatranscriptome188Y
F080570Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0302176_100294641F080570N/ALTNPSEVRYSMLWHSEHKLSALQRWILVKAYSEIVEAGSDEPKKYRRTGYLPPVHLLRINVLRDYFDIPLRTQSNDYGHRWLVIDNATAGPERANAARTSLSRSLRRLKERGLISDSIRLTLRGIDVAKELSAK
Ga0302176_100294643F029575N/AEMRDGIFSFYIRSNGTAIRAIALVESDSIRGFNRSHIYSVERLIKYSADRLRKDRNTNWRVKAMAYTHAQGVSIGGFPAKLEGEEGEEQFWFEGGSDADKHVRVEIQGAWLQNLPWQRLALRQK
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