NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268242_1141285

Scaffold Ga0268242_1141285


Overview

Basic Information
Taxon OID3300030513 Open in IMG/M
Scaffold IDGa0268242_1141285 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: San Luis Potosi
CoordinatesLat. (o)21.766Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004720Metagenome / Metatranscriptome426Y
F051625Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0268242_11412851F004720AGGAGGLRKLMLLAALLAVLAVAAIPAIAQVTQEGEQEGESAELNQTSEQTQSGDNSISCVNDQLTGNTGNAQTLNQGLQYASEGSVAPSGN
Ga0268242_11412852F051625N/AGVGNTGNAQNVTDILQYGSTADEFEFEEVGSTITVSPTNTATCDQQVNQAASASGSG

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