Basic Information | |
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Taxon OID | 3300030668 Open in IMG/M |
Scaffold ID | Ga0187737_103563 Open in IMG/M |
Source Dataset Name | Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 12_T2E_StrKB8 developmental time series (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 613 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania | |||||||
Coordinates | Lat. (o) | 40.7982 | Long. (o) | -77.8599 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F057101 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187737_1035631 | F057101 | N/A | DIEKLYETLERARSPTGLLTVKIGEMESGRFIGKVKPAKEVERLARKFKLDDPVASRLTELIHRRKKENEIDRMHKDLNTVEQHLKYCKRANAMATLLVGKLLEGEVEELPDLSDAEKVMDKYRLDDDAKSKLREIIEKRAEDKDEILVKIKKHLDNCANPSSMLCKIARPLIDNEPLADPPDRPQKGGEKGDGKGGGKGKDKN |
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