NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170818_114538311

Scaffold Ga0170818_114538311


Overview

Basic Information
Taxon OID3300031474 Open in IMG/M
Scaffold IDGa0170818_114538311 Open in IMG/M
Source Dataset NameFir Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049262Metagenome / Metatranscriptome147N
F069085Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0170818_1145383111F069085GAGMSKRTREKKSAKPQQPAKPDEISVGRRFAQPYAKARLLFDHPHSYREWNIVGQYDVPGF
Ga0170818_1145383113F049262N/AMSADPTNGQSNIDVILKAMAPDRREAFLKSRNRLKQFNENDEILALAHYLDTVVVMVDGLTKNVAAAMTAHTEPMANLTAQLKRVAAELPSHANTVTPKTIRRWLACWAASILLVAPAAFFWGWISAQREQSNRLTATLAQAPQIGPWVVAHGGWATFHPTKDEKGNLFHTLVIHLPGTDVGTTVAGDGFMNLPD
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