NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10018937

Scaffold Ga0307488_10018937


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10018937 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5565
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F023447Metagenome / Metatranscriptome210Y
F094605Metagenome106N
F101868Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1001893710F094605N/AMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSDMT
Ga0307488_1001893712F023447N/AMESQAFMGTGELIPRLMSQVGSASFGMALAKKNGFLNADGGLSALGMQRNGMDAEERAIDRAGGTGIYNPTTNRVTQY
Ga0307488_100189373F101868N/AMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIR
Ga0307488_100189375F000918N/AMYQTNQQAWDEVSNTFNESNRRTKICIEMFGQENLIGLTDDQRNLFWQSI
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