NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10000910

Scaffold Ga0307377_10000910


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10000910 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39280
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071899Metagenome121N
F089728Metagenome108N
F100248Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0307377_1000091028F100248GGAMTKLSILAILSLTFIGVTRLAQFVLSLFVIVFFGFTTFELIRTFKQPAKRQYAA
Ga0307377_1000091031F089728GGAGGMKPIVMLWAAAIAIVGSCLFWRNRRRYRRKAFLWVAMKSAVELLILFLVAALMPALLIVWLVVWVTRPIKTPWVRTVVGVLSGVVFGIFSSFALEALIFFGIFAIDLKTGAHGGGFLHCWKRAREEDADRHSTMLVPEAKAA
Ga0307377_100009106F071899GAGGMQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFPRAFHAPEEFEPETSHTEVIGLFDLIFGKH
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