NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10178088

Scaffold Ga0315899_10178088


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10178088 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2155
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F006744Metagenome / Metatranscriptome365Y
F038205Metagenome / Metatranscriptome166Y
F103246Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1017808810F103246GAGMSRAITVKVATPKVIKALETKLATIKKDYAEQGANEAK
Ga0315899_101780882F006744AGGMNLEEFKAHVLATRQASKSEALSVLSATITPTERKEN
Ga0315899_101780883F038205AGGAMGNIAEIIAVACDECGGAGFLFWGDENNYDVEACECALDDWNI
Ga0315899_101780887F002245AGGMSNLMKVPHTVVFEAIIDLDKIPANLLPTLIALDTEAITEMCKGATVHALGMSNTLEVANTGNYWAELTLKEGE
Ga0315899_101780889F004051AGGAMTLGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETENGERWTTVLADSLA
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