Basic Information | |
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Taxon OID | 3300031816 Open in IMG/M |
Scaffold ID | Ga0316042_120770 Open in IMG/M |
Source Dataset Name | Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome) (v2) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 701 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.044 | Long. (o) | 13.617 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F092084 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0316042_1207702 | F092084 | N/A | MVSSCYHSDIKDKMSRPLKVKTVIIPKGQNEYGRDVVRFTADYATSDLFEQCIGCYPLVQNDLKDSFLNEESPSPPLMIDPDVMTDEEVERWMAKYVRGNTNAFVQNAGQNVPGGRN |
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