NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10203695

Scaffold Ga0315320_10203695


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10203695 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1456
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F015946Metagenome251Y
F065802Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0315320_102036951F065802GAGGMIVLGKTPKEWRKEIGLKSLYYRAEIVIFLIGFILG
Ga0315320_102036956F015946AGGAMNKYKIVDWMNNRIFPNKVFKTFEDGWEYIYNKFDNEEDHQEYFVVNVNEKERGQI
Ga0315320_102036957F001702N/AFSQLHVLSNITWTPYRDEIFNLNKKDEKQHRFNRPSSDFEASINDCAKMFTVKHIAESLLNVEKFKIKDLLTIKKSCLYSQSVVENYKDKILEAWKDQDLKQLANLDYISLIDWKHYTEILERRSA
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