NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214473_10779086

Scaffold Ga0214473_10779086


Overview

Basic Information
Taxon OID3300031949 Open in IMG/M
Scaffold IDGa0214473_10779086 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)197
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027321Metagenome / Metatranscriptome195Y
F028835Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0214473_107790862F028835AGGMAEEDAQGGPQSAASDGQPSKEERIDFLKQAIAFTEWNIRSFDTKAQISIAAFVLSMNPLWTILTTANARAGSSLFVAALLVLFVTTVLLYGYVIWPVSLTESNLTGMWESKGLFYVGDPTRLTASLYAYRLKGLAIETELAAETLKLASIRDIKGRRFRHALVSTIVFYAGVVVAFLLFRTCGTGDRSWVCGY
Ga0214473_107790863F027321N/APEQLAGVSRLALRAYDACQAGDEQDAKALFDRLERMKF
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