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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032354 Open in IMG/M |
| Scaffold ID | Ga0325403_1000227 Open in IMG/M |
| Source Dataset Name | Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34607 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (53.06%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 32.1348 | Long. (o) | -81.9657 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000510 | Metagenome | 1067 | Y |
| F012990 | Metagenome | 275 | Y |
| F053678 | Metagenome | 140 | Y |
| F069516 | Metagenome | 123 | N |
| F094629 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0325403_100022712 | F012990 | GGAG | MERVVLLENSVGSEIHGDGTVGLDCLVEMSSHNISLDDLSIRDCTCWKRDHIYVGPVR |
| Ga0325403_100022716 | F000510 | N/A | MLDDMQFRGGVWTLSRLKQKKTENYRTKFNKIRKLLREQTLVASKHPPIEIKTDHGNKTSIYILNIYLFLTLVS |
| Ga0325403_100022727 | F053678 | GGTGG | MCNGTFEDKDPDEAMEYLDLLAENAQNWNTTGTYEAPSKTQPHTSSGGMYNLREDHDLMKQWNTWTC |
| Ga0325403_100022728 | F094629 | GGGGG | MQIRKIIEHKYSYSHQKSGAIIKKEKREFLYPFLQNQERNTKISRTHPRLRVCRWNKHLWARD |
| Ga0325403_10002279 | F069516 | AGG | VFEARVINLCDRDIATNFGAVAGEVILVDSCAIIFIFCDFYFFF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |