NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0352983_1003627

Scaffold Ga0352983_1003627


Overview

Basic Information
Taxon OID3300032541 Open in IMG/M
Scaffold IDGa0352983_1003627 Open in IMG/M
Source Dataset NameMetatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)894
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037523Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0352983_10036271F037523N/ATKNKLSFKGKSAKRIKAPEDKSVTGMILPSLVRYLDEKFIGVKAWAMNNLINKWRAEKFAKMYKIFSNKITVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCERINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKIDKKY
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