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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032770 Open in IMG/M |
| Scaffold ID | Ga0335085_10000313 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 144944 |
| Total Scaffold Genes | 150 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 134 (89.33%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001558 | Metagenome / Metatranscriptome | 671 | Y |
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F001643 | Metagenome / Metatranscriptome | 659 | Y |
| F005435 | Metagenome / Metatranscriptome | 401 | Y |
| F006672 | Metagenome / Metatranscriptome | 367 | Y |
| F018460 | Metagenome / Metatranscriptome | 235 | Y |
| F020070 | Metagenome | 226 | Y |
| F029198 | Metagenome | 189 | Y |
| F031847 | Metagenome / Metatranscriptome | 181 | Y |
| F075621 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335085_10000313104 | F001558 | GGA | MEKGPIMLRIETEELDGALICRLEGRFIGEGAEQVRALVMRCDSKLQLVVDLTEILFIDATGEEVLSFVKKLDAQFLAETSYSRDICERLNLPLVRKQKSNRRLSVN |
| Ga0335085_10000313117 | F018460 | GGAGG | MLRKLIPVFALCLLTLPALCQSASKWQVASITEVKPHPAAGEDVADPVTYDVSVKVGDTIYLVRYSTPQGEIPPKYAAGHELLVLVGKTTITYNDMLGRSFQVPIESQKPASEPKQSK |
| Ga0335085_10000313118 | F006672 | AGGAGG | MRTADMLPGESNAQIISSIINLVCPQCGGRMSEFQCEGRCCRNWLAEWEWVNFAMRNPKSRPSKHAARSRR |
| Ga0335085_10000313129 | F005435 | GGA | MFCRSCASGNYRTFNGEVAVHFPGLAGLKKPIVWVFPKLLTCLDCGFTEFVIPNPELRRIHENATD |
| Ga0335085_10000313131 | F075621 | AGCAG | MAEQFHIRADWPVLVVEDTEDRISWFRQRLPNAVFTKNAEAAFQPLSQQEFKVAFLDHDLHWMHADNSIFKGTGKQNARYMAEHGFQGIVVIHSRHEEGAAAMKKFLPKAKLAPFGTFDIVSEENR |
| Ga0335085_10000313132 | F031847 | N/A | MQETITYLKKSYRGLAQEMSIPEMVLLDAVQGKLGLTRGQWLKLGQLLGLATTFDLRPSERIGTPCWEVCYAPIPSKSDDK |
| Ga0335085_1000031347 | F001643 | AGGAGG | MLAELTDIPTDTLFDMLYMVLAREVAITAADAAALEEIQRELQRRGGAPNWSFQTAAN |
| Ga0335085_1000031348 | F020070 | AGGAG | MHWQSTTDLKGGDLLPTRIPVRIIESHSQDGNRTLDKRSVEILGTDGHFEPYQDIDRETLQLDATTVRTVMRTFSEDVSGKKTLVQVTEEEKHMLAGDDSSTARVTYNPDVNGKLQPVQREIVESKKIGTDSEETKRTVMLTSINGGLAPAFKTREVRKVGDNNTEETEKTTWLPDVNGKWQVSEIRQNAATPESNGRKIEETVFRPDAEGKLSQISRVVSHEFESSSGDKGSSVETYSIDVPGTPQDGRLHLVERKNSLSHSSSAGEEKTEQRVEQVNPGDPNRGLRVSVLVDGKMVPGPAGEQASVTIRALDSNGNFGTVSVDMTQSDRIPTIQIQQTPPEQTK |
| Ga0335085_1000031373 | F029198 | GAGG | MENHSNSKAVRVNGEVIVLHCWACGTAHCVNLELCAPEELTHMVCSNSKCRMSMFLVNELVDDHISRQLTKNELIPRATHSRFWK |
| Ga0335085_1000031377 | F001596 | AGGAGG | MSWFHTSARAGDARNHASAAEIVACFRDQRNLLHGLAFLITADRATAEQAVAKACDITLQGNSPFRNWLLEWAKAVTISTAIALEGDTIRSCEAMYKDRHCPHVEHLCQFDDERRESKLALLFQLDAQKIFAELDPLCRAILVLRLAIRSSIQDCSLRLNVSRAAVLVANCQVMTWLDHSHVNPHRDDTNISQAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |