NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10432200

Scaffold Ga0335070_10432200


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10432200 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1256
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011543Metagenome / Metatranscriptome290Y
F059472Metagenome / Metatranscriptome134Y
F073775Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_104322001F059472GGAGMNHPILRRILMLDHVSDERSREHQRRSTSAAAIVGTLIVFVLLEYRLLVEHSVPWDLIAVIYAMGGTKIGLMRWYQARN
Ga0335070_104322002F011543AGGAMFDIDSCSFKKSVPFLIAILIVAQIDLASAFGWPIALLSLLHLTPATNDLCRGVCAGIGTSLDVIVLFQFVRMWAKRALEGGSRLEQD
Ga0335070_104322003F073775AGGAGMQLLIHRLDSKHRRLFQIANAALVLGLLPWIFREYIPMNHNWLDAFCGFCMGLSVTINLFCLRAARRCQNTQA
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