NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335075_10043784

Scaffold Ga0335075_10043784


Overview

Basic Information
Taxon OID3300032896 Open in IMG/M
Scaffold IDGa0335075_10043784 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6298
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011543Metagenome / Metatranscriptome290Y
F059472Metagenome / Metatranscriptome134Y
F073775Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335075_100437845F073775AGGAGMHPLYRRLNPKQRRLFKIANAALVLGLAPWIFRESIHFNHDWLDAFCGFFLGLYITINLFCLRAARGCRERQM
Ga0335075_100437846F011543AGGAGMPFDTCSLAKSLPILIVLLVVAQIDLASAAGWPNGLLSLLHLTPAPDDLCRGVCAGIGASIDVLAIFQLARIFAKRAMQLPGDPEHD
Ga0335075_100437847F059472GGAGMTQTILSRILMLDHLADERIHEHQRRSTSTASIVGVLTAFVLLEYHLLIEHRVPWDLIAVIYAIGATKIALMRWYGFKN
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