NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310811_11408496

Scaffold Ga0310811_11408496


Overview

Basic Information
Taxon OID3300033475 Open in IMG/M
Scaffold IDGa0310811_11408496 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007125Metagenome / Metatranscriptome357Y
F070455Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0310811_114084961F070455GGAMGTHIRVFGPNLSELAQRDGQFHVHADDCADHQHYGPEGKFGGVDDYGDRLTVSSREEIVKFVYPPGEFGYAEPDWREF
Ga0310811_114084962F007125N/AVAVPLVVVGFVATRRRTVAGEHPASEDARARALTEQEFAEADAYEAKWREEDKERYRQERLP

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