NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0002144

Scaffold Ga0334980_0002144


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0002144 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9103
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F009143Metagenome / Metatranscriptome322Y
F038205Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0002144_2810_2950F038205GGAMAKVKEYLEIIAVNCDECNGAGFLFWGDENNFDVESCDCALEKWGI
Ga0334980_0002144_3777_3974F001562GGGGGMSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEKE
Ga0334980_0002144_4235_4408F009143GAGGMMTKWDTIQADVADAYVYLDEEEMYNKALEEGLVIGSTEYDEDELSKSLTLDWESYE
Ga0334980_0002144_934_1209F002245GGAMSVANGKILLFQQRKVTMSNLIKVPHTVVFEAIINLDTIPANLLPALIALDEATMTQMCKEATLHALHESNVLQTANEFNTWAEMTIKEGN
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