NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000475

Scaffold Ga0314861_0000475


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000475 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64720
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (64.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039916Metagenome / Metatranscriptome162Y
F039917Metagenome / Metatranscriptome162Y
F098494Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000475_12397_12615F039916GAGMSGNGVFMRLPSQLRPNTRITLTVSLPTEITRIPLQLRCQARVVGQKDATTYPFGIGAIIDDYQFRTVGEDA
Ga0314861_0000475_13400_13600F098494N/AVIPNSVPIGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKGQGISAIIEDFQLRPPRQKAAKT
Ga0314861_0000475_18077_18355F039917N/AMKFHGGKMKRTLTIWITLVTLLLAMAVPVSHEAQTQPDIAIPRMYRDAIADLRNAKKHLENAPNDGYGHRDRAMRMIDRTIEECQQAVRLLP
Ga0314861_0000475_19071_19382F039917GAGGMIAFGPPFVAQANFHGGKMKRTLTIWITLVTLLLALAIPVLHTALAKPAPAEHPEYRDAINDLQNARKHLEKALNDGYGHRDRAMRAIDNAVRECEEAVRVLH
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