NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310135_000614

Scaffold Ga0310135_000614


Overview

Basic Information
Taxon OID3300033985 Open in IMG/M
Scaffold IDGa0310135_000614 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23694
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066897Metagenome / Metatranscriptome126Y
F082560Metagenome113N
F103496Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310135_000614_2076_2393F066897GGAGGMSSKWFWLILIAVILFSAIFLWYNHTSTQKALIKAQETIEETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYISDDDFLNIANEYSALMVERVE
Ga0310135_000614_2390_2623F103496AGGMPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSSYEHKIDTTAGRKVNS
Ga0310135_000614_451_789F082560GGAGGVSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCIRGHTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEG
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