NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0008684

Scaffold Ga0334987_0008684


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0008684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9559
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023571Metagenome / Metatranscriptome209Y
F042214Metagenome / Metatranscriptome158Y
F058099Metagenome / Metatranscriptome135Y
F066528Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0008684_2864_3073F066528N/AMIQEYATAADFTRWREQAERMSIAELYYAAADCRQAEYAMRGWNPIREGYYSDQACTFGDEIRRRNLAR
Ga0334987_0008684_4199_4354F042214N/AMQKFLTGEEILQLVTTGMVELTDDLMLRMSESYEDSEWYNDPNNVMSRHHY
Ga0334987_0008684_4691_4945F023571N/AMNFSSLTFSDHSVIKGGTKAQHTFENGWAISVVAGPKDSGLYGDIQHDTFEVAVMRPNGNMLEDVILWQTPVQITTMMRLIAML
Ga0334987_0008684_7763_7909F058099GGAGGMTKELLIAQLRQGTNGNSILQILDALCDGMDSSESSEGIIPTLDEIQF
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