NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326723_0010760

Scaffold Ga0326723_0010760


Overview

Basic Information
Taxon OID3300034090 Open in IMG/M
Scaffold IDGa0326723_0010760 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3593
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012237Metagenome / Metatranscriptome282Y
F029361Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0326723_0010760_178_291F012237GGAMTLPNQRLKLSARGGHTCRKKSVLSVAAAGRSLSAIR
Ga0326723_0010760_2007_2132F029361AGGCGGMIDKGAPSNLRLELAGRGGRLKGRGSLLIAAAAPRSLSATR

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