NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370501_0367225

Scaffold Ga0370501_0367225


Overview

Basic Information
Taxon OID3300034195 Open in IMG/M
Scaffold IDGa0370501_0367225 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9096Long. (o)-147.9451Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030536Metagenome / Metatranscriptome185Y
F079000Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0370501_0367225_185_370F030536GGAVIRIALIVVGVVLVFALGLALGEALQDNPKPGGTQSLVRTLQPLPLAPAARETVTITVQN
Ga0370501_0367225_367_522F079000N/ADELAEAYDGADDWARTVLDDAEPDAPPVAEAGTVADAAFHLYARGATDYRP

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