Scaffold Ga0348336_022764

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0348336_022764

Scaffold Ga0348336_022764

Overview

Basic Information
Taxon OID	3300034375 Open in IMG/M
Scaffold ID	Ga0348336_022764 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3174
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.130153	Long. (^o)	-75.249887	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F037813	Metagenome / Metatranscriptome	167	Y
F094605	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_022764_2764_2976	F037813	N/A	MKQSNLYEMLKPEYKTSIATKYANRQHSHAALIRALSEEFYFTEIKYGDAFDIMNTCELDFLGDAFNKAY
Ga0348336_022764_2982_3173	F003647	N/A	MCEWTLADVKNRASNKAFAKQTILKLDIEDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNY
Ga0348336_022764_368_565	F094605	N/A	MTLQELTTFDRVFQSYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK

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