Scaffold SRS011343_Baylor_scaffold_62918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS011343_Baylor_scaffold_62918

Scaffold SRS011343_Baylor_scaffold_62918

Overview

Basic Information
Taxon OID	7000000416 Open in IMG/M
Scaffold ID	SRS011343_Baylor_scaffold_62918 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2836
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095630	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
SRS011343_Baylor_scaffold_62918__gene_83082	F095630	GAG	MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVYDI

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