 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2044078008 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045767 | Gp0051664 | Ga0025747 |
| Sample Name | Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 49174050 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University |
| Type | Engineered |
| Taxonomy | Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Texas A and M University College Station, Texas, USA | |||||||
| Coordinates | Lat. (o) | 30.620833 | Long. (o) | -96.341111 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F088752 | Metagenome / Metatranscriptome | 109 | N |
| F091897 | Metagenome / Metatranscriptome | 107 | Y |
| F101010 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2044874655 | Not Available | 760 | Open in IMG/M |
| 2044875221 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium | 505 | Open in IMG/M |
| 2044924125 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 10216 | Open in IMG/M |
| 2044943897 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3527 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2044874655 | 2044913172 | F091897 | MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND |
| 2044875221 | 2044913872 | F088752 | MKELQSVYNQITNILKENNVLINITPPRPYLIKKDDEERINAEAESLLKKGKIKEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDK |
| 2044924125 | 2044972271 | F088752 | MKGLQSVYDQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE |
| 2044943897 | 2044995396 | F101010 | MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSYLNVVIFDFENMSNSQTDNQMDDLPF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |