NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2149837022

2149837022: Human fecal microbial communities from the University of Arizona (HMP) - UAf2



Overview

Basic Information
IMG/M Taxon OID2149837022 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047181 | Gp0052357 | Ga0010881
Sample NameHuman fecal microbial communities from the University of Arizona (HMP) - UAf2
Sequencing StatusPermanent Draft
Sequencing CenterChinese National Human Genome Center, Beijing
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71414456
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:2731
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From The University Of Arizona, For Hmp Training
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationArizona, USA
CoordinatesLat. (o)32.23Long. (o)-110.95Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F047125Metagenome / Metatranscriptome150N
F066905Metagenome126Y
F074899Metagenome / Metatranscriptome119N
F076064Metagenome118N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
STU__NODE_12039_len_967_cov_11_899690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1013Open in IMG/M
STU__NODE_18147_len_2014_cov_13_316286All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:2732060Open in IMG/M
STU__NODE_37658_len_517_cov_10_315281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes563Open in IMG/M
STU__NODE_46334_len_889_cov_11_838020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales935Open in IMG/M
STU__NODE_5209_len_2711_cov_29_897823All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii2757Open in IMG/M
STU__NODE_798_len_9663_cov_59_361378All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales9709Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
STU__NODE_12039_len_967_cov_11_899690STU_0398.00001180F047125MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS
STU__NODE_18147_len_2014_cov_13_316286STU_0178.00000800F066905MPEESRDCGCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR
STU__NODE_37658_len_517_cov_10_315281STU_0916.00002250F074899MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSS
STU__NODE_46334_len_889_cov_11_838020STU_0626.00002430F029444MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLKKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF
STU__NODE_5209_len_2711_cov_29_897823STU_0924.00000600F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNETRRDPMPVLKLY
STU__NODE_798_len_9663_cov_59_361378STU_0744.00000020F099451MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE
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