 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001049 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0053876 | Ga0000762 |
| Sample Name | Marine microbial communities from the Deep Pacific Ocean - MP2159 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 25131037 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southwest of Acapulco, Mexico, North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 12.0 | Long. (o) | -108.06 | Alt. (m) | N/A | Depth (m) | 3103.11 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031535 | Metagenome | 182 | N |
| F076187 | Metagenome | 118 | Y |
| F082562 | Metagenome | 113 | N |
| F090504 | Metagenome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI11855J13214_100229 | All Organisms → cellular organisms → Bacteria | 4924 | Open in IMG/M |
| JGI11855J13214_100540 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense | 3311 | Open in IMG/M |
| JGI11855J13214_104171 | All Organisms → cellular organisms → Archaea | 938 | Open in IMG/M |
| JGI11855J13214_105881 | Not Available | 738 | Open in IMG/M |
| JGI11855J13214_106016 | Not Available | 726 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI11855J13214_100229 | JGI11855J13214_1002293 | F082562 | MKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRIXLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI* |
| JGI11855J13214_100540 | JGI11855J13214_1005401 | F031535 | IDKPSPKATTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYPANIE* |
| JGI11855J13214_104171 | JGI11855J13214_1041715 | F076187 | VAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK* |
| JGI11855J13214_105881 | JGI11855J13214_1058811 | F031535 | TDNIIARGPKNTRAYVAIASANQLRGLTNKVNHFQVPFKTSEFSTVNIK* |
| JGI11855J13214_106016 | JGI11855J13214_1060162 | F090504 | MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKEK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |