Sample 3300001568

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300001568

3300001568: Marine microbial communities from the Deep Indian Ocean - MP1374

Overview

Basic Information
IMG/M Taxon OID	3300001568 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054357 \| Ga0000784
Sample Name	Marine microbial communities from the Deep Indian Ocean - MP1374
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	27294377
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South of Port of Lincoln, Great Australian Bight, South Indian Ocean
Coordinates	Lat. (^o)	-39.23	Long. (^o)	135.19	Alt. (m)	N/A	Depth (m)	3995.55
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076187	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI12071J15745_105001	All Organisms → cellular organisms → Archaea	983	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12071J15745_105001	JGI12071J15745_1050015	F076187	LVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.