Sample 3300003502

3300003502: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM

Overview

Basic Information
IMG/M Taxon OID	3300003502 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110179 \| Gp0089082 \| Ga0008484
Sample Name	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33245565
Sequencing Scaffolds	50
Novel Protein Genes	53
Associated Families	52

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	13
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8
Not Available	14
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum hungatei	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	Joint Genome Institute, California, USA
Coordinates	Lat. (^o)	37.931388	Long. (^o)	-122.021761	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002896	Metagenome / Metatranscriptome	522	N
F005305	Metagenome / Metatranscriptome	405	N
F005950	Metagenome / Metatranscriptome	385	Y
F007370	Metagenome / Metatranscriptome	352	Y
F008966	Metagenome / Metatranscriptome	325	Y
F008973	Metagenome	325	Y
F009617	Metagenome / Metatranscriptome	315	Y
F010272	Metagenome / Metatranscriptome	306	Y
F011209	Metagenome	293	Y
F011591	Metagenome	289	Y
F012397	Metagenome	281	Y
F012520	Metagenome / Metatranscriptome	280	N
F013350	Metagenome / Metatranscriptome	272	Y
F013352	Metagenome / Metatranscriptome	272	Y
F014557	Metagenome / Metatranscriptome	262	Y
F018055	Metagenome / Metatranscriptome	237	Y
F019802	Metagenome / Metatranscriptome	227	Y
F020931	Metagenome / Metatranscriptome	221	Y
F023374	Metagenome	210	Y
F023901	Metagenome / Metatranscriptome	208	N
F025701	Metagenome / Metatranscriptome	200	Y
F032456	Metagenome / Metatranscriptome	180	Y
F033614	Metagenome / Metatranscriptome	177	Y
F035105	Metagenome / Metatranscriptome	173	Y
F035897	Metagenome	171	Y
F037266	Metagenome	168	Y
F037804	Metagenome	167	N
F045821	Metagenome	152	Y
F046711	Metagenome	151	Y
F048144	Metagenome	148	N
F048397	Metagenome / Metatranscriptome	148	N
F048660	Metagenome / Metatranscriptome	148	Y
F050439	Metagenome	145	N
F056125	Metagenome / Metatranscriptome	138	N
F057496	Metagenome / Metatranscriptome	136	N
F057555	Metagenome	136	Y
F057659	Metagenome	136	Y
F063100	Metagenome	130	N
F063176	Metagenome	130	Y
F066110	Metagenome / Metatranscriptome	127	N
F068543	Metagenome	124	Y
F070698	Metagenome / Metatranscriptome	123	N
F077482	Metagenome	117	N
F080579	Metagenome	115	N
F080633	Metagenome	115	Y
F084279	Metagenome / Metatranscriptome	112	Y
F090769	Metagenome	108	Y
F097794	Metagenome	104	Y
F098253	Metagenome / Metatranscriptome	104	Y
F100581	Metagenome / Metatranscriptome	102	Y
F100610	Metagenome	102	N
F101793	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI26143J51219_1000030	All Organisms → cellular organisms → Archaea	5783	Open in IMG/M
JGI26143J51219_1000184	All Organisms → cellular organisms → Archaea	2674	Open in IMG/M
JGI26143J51219_1000189	All Organisms → cellular organisms → Archaea	2649	Open in IMG/M
JGI26143J51219_1000246	All Organisms → cellular organisms → Archaea	2251	Open in IMG/M
JGI26143J51219_1000312	All Organisms → cellular organisms → Archaea	1984	Open in IMG/M
JGI26143J51219_1000329	All Organisms → cellular organisms → Archaea	1897	Open in IMG/M
JGI26143J51219_1000552	All Organisms → cellular organisms → Archaea	1440	Open in IMG/M
JGI26143J51219_1000639	All Organisms → cellular organisms → Archaea	1339	Open in IMG/M
JGI26143J51219_1000740	All Organisms → cellular organisms → Archaea	1265	Open in IMG/M
JGI26143J51219_1000816	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1203	Open in IMG/M
JGI26143J51219_1001100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
JGI26143J51219_1001108	Not Available	1071	Open in IMG/M
JGI26143J51219_1001554	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
JGI26143J51219_1001642	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
JGI26143J51219_1002119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
JGI26143J51219_1002529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
JGI26143J51219_1002968	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
JGI26143J51219_1002975	All Organisms → cellular organisms → Archaea	765	Open in IMG/M
JGI26143J51219_1003004	All Organisms → cellular organisms → Archaea	763	Open in IMG/M
JGI26143J51219_1003242	Not Available	746	Open in IMG/M
JGI26143J51219_1003307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
JGI26143J51219_1003371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
JGI26143J51219_1003507	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
JGI26143J51219_1003563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	726	Open in IMG/M
JGI26143J51219_1003917	Not Available	702	Open in IMG/M
JGI26143J51219_1003962	Not Available	700	Open in IMG/M
JGI26143J51219_1004014	Not Available	697	Open in IMG/M
JGI26143J51219_1004113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
JGI26143J51219_1004578	Not Available	667	Open in IMG/M
JGI26143J51219_1004992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
JGI26143J51219_1005172	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
JGI26143J51219_1005226	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
JGI26143J51219_1005827	Not Available	619	Open in IMG/M
JGI26143J51219_1005934	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
JGI26143J51219_1006005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
JGI26143J51219_1006218	Not Available	607	Open in IMG/M
JGI26143J51219_1006629	Not Available	594	Open in IMG/M
JGI26143J51219_1006724	Not Available	591	Open in IMG/M
JGI26143J51219_1006819	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	589	Open in IMG/M
JGI26143J51219_1007711	All Organisms → cellular organisms → Archaea	567	Open in IMG/M
JGI26143J51219_1008403	Not Available	551	Open in IMG/M
JGI26143J51219_1008410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ubonensis	551	Open in IMG/M
JGI26143J51219_1008428	Not Available	551	Open in IMG/M
JGI26143J51219_1008550	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum hungatei	549	Open in IMG/M
JGI26143J51219_1008658	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	546	Open in IMG/M
JGI26143J51219_1008921	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
JGI26143J51219_1009310	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
JGI26143J51219_1010057	Not Available	520	Open in IMG/M
JGI26143J51219_1010322	Not Available	516	Open in IMG/M
JGI26143J51219_1010645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26143J51219_1000030	JGI26143J51219_10000302	F100610	MMPVIISLFGNEDMDISEFRLTNKSVFYRCSYGECFRFIADKCMHCCANPIPDTEMHINYLRRXPDIKKAVTDLGI*
JGI26143J51219_1000184	JGI26143J51219_10001841	F057496	VYRNHTKVAEDHSSAYCKDEYVFGXKGEPLRLSHLIAFNVIEDAEHISGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGNPTVMKNIDAYLRNNLLESEYGLKL*
JGI26143J51219_1000189	JGI26143J51219_10001896	F023901	LDPNKFGGYEFAINTKGWDAKREPTHNCHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVRDVSLEILS*
JGI26143J51219_1000246	JGI26143J51219_10002465	F048397	LEKNKCDKCXLTIHPNFIGNHKCDHQNCPICKNPITPSQYWPHIRSHPGHENDSPPLPKRNMXENRKNENHSGYGNYQRN*
JGI26143J51219_1000312	JGI26143J51219_10003121	F010272	EMYMNHERKLILIAIGAFVTLSLFVFPSTNMIAYSQSENKTQGKEQAQEKLFELAQKFNKILKDSNVNLTLPQNGDLSSKLQELKDSGAFKELSEKFSQAVQELGQGNKTEELKQEAGADLSKLMQKLQSLRNNSTQ*
JGI26143J51219_1000329	JGI26143J51219_10003293	F012397	VRWNRILILIVLVTTLSFLSGPSLSFSEIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAITKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSXLLDSSSGLIPKNEFLSKIPEGYDVPFKGMLILTQKHNXLYAIIFLNPKEKFDSMLNQIQPTLDSIQXSG*
JGI26143J51219_1000552	JGI26143J51219_10005524	F002896	MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH*
JGI26143J51219_1000639	JGI26143J51219_10006392	F005305	MEDLEKELGPLIENFQXLVKDAKSKKLESLREDEDFKKEFNXLSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS*
JGI26143J51219_1000740	JGI26143J51219_10007401	F013352	SASQFSRLPCLSIAIAGFLFSLMSSSTNAQIEVTVDENVSNPIFNSILSEDAEPRPDILYSTLNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGSRSGFDIFLDETLPSKSKYALTTXFEKSXDDKPEXLQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVXXTDYVFTNPDIISPNXKAPFEFSFYVDNPEKIKSMAFNVQSDEYSLITDNGQNNTISQQ*
JGI26143J51219_1000816	JGI26143J51219_10008162	F070698	MAILNLSETWNNGHNTXFRDSYLXDDNSKILPNGNAPYVIKGNXDCMIIVHADALGASKNFGDGH*
JGI26143J51219_1001100	JGI26143J51219_10011001	F011591	RSNAAKRTRVSTDGAPLFECTAEPPHRFAISGKVRVRNGVLLTLQRVDERYPPRDMFITSRELKMGYENVFKGCFVCVDRGLSENAIAIPKDHIQAGLPA*
JGI26143J51219_1001108	JGI26143J51219_10011081	F037804	MDDIEHDLEEFANYILEAIKQSEGEISNWDEIIRKWKEIEKKKDLAL
JGI26143J51219_1001554	JGI26143J51219_10015541	F100581	LTIGRRELAAAISIPIVFAVLFYTPPLAFNLLVAVVALGALWEFYRLAEKTG
JGI26143J51219_1001642	JGI26143J51219_10016421	F066110	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTT
JGI26143J51219_1002119	JGI26143J51219_10021191	F009617	PAEYFSALSEISALPDGGFGIMDTIFRRPVRVLRRDAPAKIRALLEARGFIESRGWEARAIDLRFADRIVLVGAYGAGNSL*
JGI26143J51219_1002372	JGI26143J51219_10023721	F056125	VLAFAAIALALPVAVAHGGSQWPADSSVDERPPDLPPWLLASRLGRPVDDPSREDMMPTGGLSDLGAVMLRDTPGAIEADPLTLRTSSRADSTDLRAILGNSDRWQLMRFGATAGSPQEMKFSAYGTVAYLPSTLMASRPDAGLGYGPAAAASLGLDDQEEPISLGFKAELNGLEGGADYRSVGKRLEPMVSVPASQRDREGTEVWVAQRLGRLRFKLSQSDLSDNVDRNPAVPRTNRTQTAIGAQVTPRGWPILGLTYATGTLERTWLTGSGR
JGI26143J51219_1002529	JGI26143J51219_10025291	F045821	RYAVRLDSAEQVGRAAEAIDNGWREAMPALRALXLEGDELCFEVNLDQSAGETATAKKVLETLLGVPPEAQATLSVTRRATVLG*
JGI26143J51219_1002968	JGI26143J51219_10029681	F046711	VIRLAAALWTMTLLGAALPAAAQSITCPAGTKLGGAETEVGKFQWCEQSAPGGMIRQGPMVGFHPNGRRSFELTFVDGTPRGSIRAWYEGGQPSMTGDTRPDNGTLILWDERGRRRAQIDVRERQVLTQAWDEQGREERYDEKKLARAFPNNRNLPFIMNLFAVGIGIQ*
JGI26143J51219_1002975	JGI26143J51219_10029751	F005950	MKMTNGKNRIKVKIHRTSDYDDKYTGIRDFPDEKAMLXYGLSKVHKVIIRKYTEDDEFIARAQKTRGIKFDYEMELYD*
JGI26143J51219_1003004	JGI26143J51219_10030041	F068543	DCSIVQPAVVIESAIDQAGNSLSPGDLISPQKVTYSFSAQASETVQALEEEGPQDYQYECALDDESFNSCNSPMTYELDEGKHDFVVRLVP*
JGI26143J51219_1003242	JGI26143J51219_10032421	F020931	LSPRFGFFKRKTSDNIQDKESEANSVYSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLECLDRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKFKSEFDNLSSLLKEVTKIL
JGI26143J51219_1003307	JGI26143J51219_10033071	F063176	MNDAEKKTPRVSRTARIEGLRRRGEFERDTLAREIQGLRGAVEAKRARWKTAGWIAGAGAVAWTLGRQFFGRHSLAARIGRLTSVAQVLFGVGKAVGKARRFW*
JGI26143J51219_1003371	JGI26143J51219_10033711	F084279	MKKTLMTCLAIAALFAIAGSASAITCTIDQRPAATLLVPYFEASFNPDGTPSGTGPNARDTLVTICNASSAPMIAHVNVFNERTELVLDFNIALTGFDCQSMSMARVLQGFLPATPVTTAHVPATADACQRNPNAGVYSPPTVTGEYLRI
JGI26143J51219_1003507	JGI26143J51219_10035072	F023374	QNPDAPGAQPLTILFPANRLQLAFRAGQYRLVARPTGAAPGSLPAVTWSRQVEIDPRVRGFKLTFNEADFK*
JGI26143J51219_1003563	JGI26143J51219_10035632	F080579	VRYLALIYLAPGQREGLRRYERSVLPVFKRHGGAFERIWTPVGPDAAPDAEAPDEIHLLRFDREDGLEAARRDPEMQALAELRARVVRKAVLVRVADVPLA
JGI26143J51219_1003917	JGI26143J51219_10039171	F063100	VLPTTFSDRFQQMMSAKLVELRKESSIEFSKAEADAARRGEVSASSTAGLRSQVDIHLVKKIIAAAVVLLTELISELQIPFSDSLAGELKDQVKAYVSNEQCEDLHRMNRGGISEQHAARLKEEL
JGI26143J51219_1003962	JGI26143J51219_10039621	F077482	MSIMPKWMNWLPHQWYASTLVLPIVILAYPSLRCGEAYELLLDRELSALDQFYAGWGTVIRMDENSEGQGPXDTMQDNEYRPAGGIKKFAEPTIQLRGTAEKIGLDRQSLSSFIGTKFLNEFAFLQSDFVFEKTYQTWEIGIFECETWTVGVNYPIAFHVQCAGGSMDEPREWHYASLGYGPADKTSETVRGTLDAIIQE
JGI26143J51219_1004014	JGI26143J51219_10040141	F037266	GPMGRIRWPQVIFLGSTWAVVSFLALMVVGLAWTTRLKPQALADARAQRQETVRVLARLADAQVRDRLDALEPLAAHLAQSWASHEPRALQREMDTMRATLQMPTLFVVTPDGRPLAFSPLVGPDGASNLDLRYADRPLLQEAIRTQRPAISGIIYGRASRDFIVGAAVPVRIDRQIVAYLLGSIRLQASIEAIEQAAAGPGGWLVMIDGEKRAIYLDSKTRQITQADWTGH
JGI26143J51219_1004113	JGI26143J51219_10041131	F080633	SSCQYPGKFRGPRRKETVGVPGTRTLNTTLKNPSELVARLELEEPERLLLLDAPEELAKLLETARTGPKVTVRAEGDALRSVKETFGAVLVWREHRGGSRAVLDGAVKKLEPGGALWVVTALRKVRGPSTPAVHRLERADLVKAFEKEGLANDREVRVTAWHVGYRFVPTPRTGRTSP*
JGI26143J51219_1004113	JGI26143J51219_10041132	F090769	PTGVRFDFNAPLKVGTRYPVSLKAPGVAFSTTIEVSRCQLTVDSATGRFFRVTGRFYPYVE*
JGI26143J51219_1004578	JGI26143J51219_10045781	F101793	PILGLTYATGTLERTWLTGSGRPFAVERQSFDSVAASVYYSRSEFDLSGSSVYGYSRDLANADREMTSLYHDLTLTLRPLKTVTLMPSVSTGTDRYDWASGQYQTTTLSLLLTYGPVASRWNVWTLGAYSTSQTSDRTVDGRIMSVSGGLACGLGPMLGGRASVSVEAGYDRYVDSVYPDTSSRGAFGLVLLKVSSF*
JGI26143J51219_1004992	JGI26143J51219_10049921	F097794	VTPKTSASELVTLRGKWQKQHKRLYDRDTGLPTVAALMEELVSQLRERGSLSILSFCPGSEGRVEEVWGWKAYDDLLLDFVRRLKSFQADGILPAGTFCLPHVSSDEVLLVLDPKAASLDRVPALEQKAAELDLFIRGYLAERADLSGRFRSFVGASRIHSDPRRRPERLVY
JGI26143J51219_1005172	JGI26143J51219_10051721	F025701	SEHHGVPVVYLHSPYATSKTLGNWNPGSVMYDLFLDVLASGK*
JGI26143J51219_1005226	JGI26143J51219_10052262	F011209	QVSASRKAHGDPRITGDPVLKALLSQAPNWQVGQPTPKWVAAENLTRPVIESVYTGQKPAKAAMEDLARQINALPD*
JGI26143J51219_1005827	JGI26143J51219_10058271	F014557	MNGQRSFDRGIARAMTRRQFLARLARASAAATLVSSTLGCGRVRGAIARLGSTEEPIFNSVQEEVVEKIIDGFNPPDTEIRQRLAREDPDYDPVAVYAQXAWASGDEFLASMRFLVDFVNVLPTFTRTFSTRYGLPARLELRRFHPVDANRYFLFLRDSNIRALRNIFSGA
JGI26143J51219_1005934	JGI26143J51219_10059342	F013350	MRRLGATLLAAVLLAGCATSGPPRPRLIAADATQTPRRCSPADPDRWAWFCVVGQVLYDAAAFFTPVNEVTMR*
JGI26143J51219_1006005	JGI26143J51219_10060051	F057555	MRGNRSVRGRGNIGXLLWLIVVVAVGHVLWKVVPVKIKTSAFYDVMQEQASFGSIKSEGAIQYEILRRAEELKIPVTKENFKIVRSREAVTVEAHYEIPI
JGI26143J51219_1006218	JGI26143J51219_10062182	F019802	MGVVDGGGRRGSRQSALKLMVLNLKLFDSMFGSQSPVAPPLPTAVDFVTSLPEAAPVFATTNRPLFPCLPRLLDSTEIFTFLSRHHPYP
JGI26143J51219_1006629	JGI26143J51219_10066291	F035105	MTRRSLFFVIAACGLSFALAASASAECAWVLWSQTHDPKPGAWMLQTAYPNVGDCTKAIDHREKEGRKATYVMEDGRKIKGVTDRRAPTDLFVLYGRDASNGGVVWQCFPETIDPRGAKAR*
JGI26143J51219_1006724	JGI26143J51219_10067241	F008973	VLFFVLTWLTGLLLAASFASAAYGFGRMAAPERTDVISLAIFGAIGLLSQAGLLLAPWAVTRGTTPRTIAALLMGPSGVFLSIFAYEGFTRYAAGAPIWVVAWAAYVCGVFVYAAVYVALARGRLGRRPGE*
JGI26143J51219_1006819	JGI26143J51219_10068191	F035897	RMSLTMGLLFWLTLGACEQQGPPPKPIGAATNKHVEETRPLPSRSDADAMIQNMKVPMEDARQTEDVLKGAAGRTRQQSEQTTP*
JGI26143J51219_1007711	JGI26143J51219_10077111	F057659	ASLPLTLQVPPISGTNLTCINGNNTKLGNQSIDLSLMNEEYFKNLSSDNYQLAQIICPDTLNHTTN*
JGI26143J51219_1008403	JGI26143J51219_10084031	F048144	MVLPAKYPSSDNNELHEKLKWSFSCAIDKSEFLKLSKDIKTIEGWYREAKKTSDNISNPSLVSGEMIKELLNHVYPHYTNIIIEKTDINIKSTDGGVQSDFDLGIVTMRPYVEFVKIVNGESMPTSKFTFQLDIRTYISIFKAVNNSASEYIELKKLGIELEISLLHMPYFYLT
JGI26143J51219_1008410	JGI26143J51219_10084101	F018055	PGERILFYRVALPGAPRYGRKGGSMHQYSDHPIYGIGICGPEKKWHCRGLIFDSEDKVTEIRRLECPELTFATKRKAEEHALKLCKQWIDEQGSGIDSSSPTQSAPLKAGALAL*
JGI26143J51219_1008428	JGI26143J51219_10084281	F012520	MMLVAYPWLVLFAMGWIVGAIFVGAVGGATRGVQGFFAWLLLALLFSPLLAMLGLIGVLLGDVAREIQIKAIHGPEEILPSPPLRRS
JGI26143J51219_1008428	JGI26143J51219_10084282	F048660	MKRASIGLGILVTFFLLAMFLMADAEVQPLDDSPVLTSSPSAR*
JGI26143J51219_1008550	JGI26143J51219_10085501	F007370	MPSNTPDDSRVVSVRLPTPLLQRLDRLLDWHTTHRQRPTTRNAALRAALGDWLDQQEQLAGLLDSQVLRQQFHAAYTSLRPSATGVPIYRLRRVLQWPRERFDTVLETLRAAQVIEVEACTEPVGNDPATYD
JGI26143J51219_1008658	JGI26143J51219_10086581	F033614	ALKLHGPWGTSYWLEFNPSTFKVGDGSSRPTLXPLSFDVKWEWSAVDPNIIYFINGTQLAKYNKSTHVVTNLGGRGVSLKYHVVVVGLDAWVCAAGPGTQNTYRQIFCLNPRNPSQTKFIDILKRTINGVYQSDPNWPTSAPYQTIGIHAMYGSATGTWLDVGFHRASWGAGGDSVFNLS
JGI26143J51219_1008921	JGI26143J51219_10089211	F057659	VFWAFVIIILVFVTTLPVVHRVIPSISGENLSCINSNITKFGNQSINLSIMSEEYFKNLTSDNPQLAQLICPDIINYTTK*
JGI26143J51219_1009310	JGI26143J51219_10093101	F098253	MTDNRDEKFDNLLRSRHIEPAGSDLAQRIILKARQRPQNNPMPFWQPIRDLFGEFHLPKPEYVLASVLFLGIAIGFTVPADTNLPSDDGSAYVQSFLSADEALL*
JGI26143J51219_1010057	JGI26143J51219_10100571	F050439	TYTQLYPAVLGSMLYDVLHVTEGWGPLQAVEISITLLYCIDFFYLQSDLGSDQLPQGNWRDTMLDAAIAVVFGAAYWXASDRKLFTCYALLAVAGALIVAYHFTPNRRFLWAILPHSVLTVLFVSLAWLARGLENVTWTFAVVSWFPTIWYGTYVFWLAHRILPSGK*
JGI26143J51219_1010322	JGI26143J51219_10103221	F032456	MIRAIVLGSVAVLTVGYAWPPDYAEQSRADVATCVSYTRQTSPQFDAQVRDVDLRTGHVDIQRSAADARAEVAFASCLLAVRHWRLIERHLPSPTDP
JGI26143J51219_1010645	JGI26143J51219_10106451	F008966	MVTVTAETSSSSSLDDAWAALGRRATYFYFPGVSRSPSGATLDHALDLPIVDRQEQVATLRIDRPSRPSPLEGRGQGEGGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003502: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences