NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006568

3300006568: Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2



Overview

Basic Information
IMG/M Taxon OID3300006568 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052500 | Ga0100215
Sample NameHuman stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size185956004
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. 1-31
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026592Metagenome / Metatranscriptome197Y
F029444Metagenome188Y
F042936Metagenome157N
F044554Metagenome154N
F047755Metagenome149Y
F055775Metagenome138N
F062845Metagenome130N
F067720Metagenome125Y
F068811Metagenome124N
F074899Metagenome / Metatranscriptome119N
F076064Metagenome118N
F078693Metagenome116N
F081354Metagenome114Y
F081453Metagenome114N
F088914Metagenome109N
F088921Metagenome109N
F099269Metagenome103N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0100215_100616Not Available42653Open in IMG/M
Ga0100215_100669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales40124Open in IMG/M
Ga0100215_100864All Organisms → cellular organisms → Bacteria32848Open in IMG/M
Ga0100215_100953All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia30302Open in IMG/M
Ga0100215_101419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales21218Open in IMG/M
Ga0100215_101471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae20448Open in IMG/M
Ga0100215_101511All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii19946Open in IMG/M
Ga0100215_102653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales11835Open in IMG/M
Ga0100215_103242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia9772Open in IMG/M
Ga0100215_103497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile9051Open in IMG/M
Ga0100215_104952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6414Open in IMG/M
Ga0100215_105614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5680Open in IMG/M
Ga0100215_106730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4699Open in IMG/M
Ga0100215_109337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3296Open in IMG/M
Ga0100215_109606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3199Open in IMG/M
Ga0100215_110876All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/742793Open in IMG/M
Ga0100215_110963All Organisms → cellular organisms → Bacteria2768Open in IMG/M
Ga0100215_111943All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2516Open in IMG/M
Ga0100215_113727All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. 1-32125Open in IMG/M
Ga0100215_115010Not Available1907Open in IMG/M
Ga0100215_132939All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes683Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0100215_100616Ga0100215_1006165F055775LVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIIDAKSGAVEAIALN*
Ga0100215_100669Ga0100215_10066957F026592CQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0100215_100864Ga0100215_1008644F067720MASTTYEHPGGVTEMYAVQEQFRHVTKMVCARFLDLTKTYRLGNVPVMVRNAGQLPQPFWLGASCGGGSCGAARCAART*
Ga0100215_100953Ga0100215_10095327F099269VHGVLVSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRDRRCTPV*
Ga0100215_101419Ga0100215_10141911F081453MYPFFLLAGNNIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ*
Ga0100215_101471Ga0100215_10147125F081453MFPFFLLAGENIIEKHISANPVCGTNIKAPEPATKGAPGRKFV*
Ga0100215_101511Ga0100215_10151115F076064LKKTIPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0100215_102653Ga0100215_10265312F013656MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL*
Ga0100215_103242Ga0100215_10324213F047755MEEDKVKNVINIIKDMNIKDKLRLAICMTQSKLSGLIYNTKENYEKFDAMLKEVDEEYRTTLINFGQSKYFNINFAMAKLMEMETTEQNKVAFYLFNNIK*
Ga0100215_103497Ga0100215_1034977F042936MGRGGGKGRVWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0100215_104952Ga0100215_1049527F029444MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQILGCRFVGFDEPKKAAPFFNF*
Ga0100215_105614Ga0100215_1056143F078693MVLAPVRGEERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC*
Ga0100215_106730Ga0100215_1067305F062845MEKTSFILHEKFHSETNQQRKERFQREFERYIVDRLSAADPSKAGV*
Ga0100215_109337Ga0100215_1093371F101355MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0100215_109606Ga0100215_1096064F074899MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK*
Ga0100215_110876Ga0100215_1108763F088921LEAAKKIAVKTSALGATIRLYKIGARKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKMRSKS*
Ga0100215_110963Ga0100215_1109634F068811MDQDESEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSVILNENVSETLCIFSIDKTNCCRI*
Ga0100215_111943Ga0100215_1119433F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK*
Ga0100215_113727Ga0100215_1137276F081354LSAKKALDLVRENQQSSAHNFVKDFSPIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLPITISSMELPKNFENKKLPN
Ga0100215_115010Ga0100215_1150101F044554AAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCFTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0100215_132939Ga0100215_1329391F076064HAVRFAVGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY*
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