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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008795 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117964 | Gp0126290 | Ga0103701 |
| Sample Name | Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Tennessee |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7204579 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | western basin of Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.76 | Long. (o) | -83.31 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002557 | Metagenome / Metatranscriptome | 548 | Y |
| F012015 | Metagenome / Metatranscriptome | 284 | Y |
| F018650 | Metagenome / Metatranscriptome | 234 | N |
| F027191 | Metagenome / Metatranscriptome | 195 | Y |
| F038100 | Metagenome / Metatranscriptome | 166 | N |
| F049407 | Metagenome / Metatranscriptome | 146 | N |
| F057413 | Metagenome / Metatranscriptome | 136 | Y |
| F080927 | Metagenome / Metatranscriptome | 114 | N |
| F081389 | Metagenome / Metatranscriptome | 114 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103701_100685 | Not Available | 1131 | Open in IMG/M |
| Ga0103701_100768 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea | 1069 | Open in IMG/M |
| Ga0103701_100964 | Not Available | 953 | Open in IMG/M |
| Ga0103701_101281 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | 809 | Open in IMG/M |
| Ga0103701_101363 | Not Available | 779 | Open in IMG/M |
| Ga0103701_101793 | Not Available | 679 | Open in IMG/M |
| Ga0103701_102176 | Not Available | 607 | Open in IMG/M |
| Ga0103701_102439 | All Organisms → cellular organisms → Eukaryota → Sar | 569 | Open in IMG/M |
| Ga0103701_102723 | Not Available | 532 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103701_100685 | Ga0103701_1006851 | F081389 | MKFAIVLLSCLSVISCVQQGGIGGMGLRGGMQGGLAEGFIWGRQDDSTRRNECQYVSDLNIISCFRGLVECETIAHFEELSQNYEIFGIGTTDMIKFNLYPRNFSDSVYGDCRQQTTTGNWVELSFYATGQQPLTTSRGLMVKDATCYKRIIDLIKVIDYQVMVDLVTKQRVTMLGYINNLSGETIRIQREQNNGTLPFGKSLGKKLDLDIGRKFDRMEVDSVVAGNPLMAPVSGFIWGSLEDTNRRFECQYSSELMTLSCFRGLVKCETLPRLDDLAQTYEIFGLGSTDMTTFHLYPRNYADTTFADCRVPLTTGKTVELNLCHTGVDCMGLMVRDTVCYQKIVDVLKTVTEPVMVDVP |
| Ga0103701_100768 | Ga0103701_1007681 | F057413 | GGGAYAYSFDVTVLLMGACFNLAGLPYSAGFIGKEFLLFQVLRDDFISIFVRGC* |
| Ga0103701_100964 | Ga0103701_1009641 | F012015 | PERFNLLQKIRAKAHQSASEQGLKSKYSFDKNTMPHKFKIGDKVLISNDFYVGKNPKLAPTYTGPGEIIDINDTNAKVKINNKIKILNVNKLKLFLQEHQSDEEQTFLDYNFNDAESDKPLTRARAKLINYKNAAQLALLMLKEEGGYSEIETIDSLCSEPCPSCDTENDYFKLNPPKRNWTQKCHNCEEYKKLFLKLKECEEQCYQLKQQINFARQHRLHQINQIKSVDTKLKTGIAESLREPLMKIAQHLLISDKNTFEQLTPEDKKLWTTFETSDIYRFLTGEEDTYPEFQYNWTTVPKLQPLGPTHTLASANP |
| Ga0103701_101281 | Ga0103701_1012811 | F018650 | MYVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDIIENHLLSHVIPAPADISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFCPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFGFKYFHRSQIEHLLKKITKFLGRKNSMIQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGL |
| Ga0103701_101363 | Ga0103701_1013632 | F049407 | NKHSFELAFGHSKPKQISKPQSCVAASGDKMSSYGVFEIDLFIKGKKFTHPVNVIEELNENIIGIDFIHAHKLTYDVISRKVMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNLIVENLNVTIYLE* |
| Ga0103701_101793 | Ga0103701_1017931 | F038100 | YQLMINAPRFKVTETSRSFPADDVESNRQIQIKTVDNCPTDNIVKISESYRGYRSLTSVENCIFIRKQSIDKLLQVCVQTLNTLLLPPKEDLNLPFGCYASRMLKDHSSGMSYLVDITREPMQEHGFRFVRIFQQTTFNQKDVGNVDIPWNHFEIFTRELNGFLKTPGRLATFFPKASKLQRTKL* |
| Ga0103701_102176 | Ga0103701_1021761 | F002557 | MIISGRQSHLSVLMHSSNHYPLGNCDSPKSETNLGYLTQFEAVSHRLSLPSSFFAFTDGARTPPEELVNPASAPAPCSK |
| Ga0103701_102439 | Ga0103701_1024391 | F027191 | MLKRHKAVRFLISPKIKKVKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQTSNALSGCEKEEIPK* |
| Ga0103701_102723 | Ga0103701_1027231 | F080927 | SPSASLEALPSDKVKLLEALKKRRTYLYRLCTRLRREAQANENVSSERWNQLTEGAMRHLVDLNTIESEIAEILKPTKRDREKTKGYKKNLRELIATFGEFRDSQLQKETAKRKAEQSEKEVLSDTGSDQGRGFETADEFNQRLNEAASLNPDEPDATVILPGATHRRDARVHFDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |