NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009344

3300009344: Microbial communities of water from the North Atlantic ocean - ACM58



Overview

Basic Information
IMG/M Taxon OID3300009344 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117984 | Gp0126423 | Ga0103834
Sample NameMicrobial communities of water from the North Atlantic ocean - ACM58
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Georgia
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45141334
Sequencing Scaffolds15
Novel Protein Genes19
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea2
All Organisms → cellular organisms → Eukaryota → Sar4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000237Metagenome / Metatranscriptome1498Y
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y
F001478Metagenome / Metatranscriptome687Y
F001583Metagenome / Metatranscriptome668Y
F003081Metagenome / Metatranscriptome508Y
F004358Metagenome / Metatranscriptome442Y
F005505Metagenome / Metatranscriptome398Y
F006008Metagenome / Metatranscriptome384Y
F013645Metagenome / Metatranscriptome269Y
F027191Metagenome / Metatranscriptome195Y
F030104Metagenome / Metatranscriptome186Y
F051986Metagenome / Metatranscriptome143Y
F064686Metagenome / Metatranscriptome128Y
F090413Metagenome / Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103834_1000226Not Available1962Open in IMG/M
Ga0103834_1000300All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1777Open in IMG/M
Ga0103834_1000411All Organisms → cellular organisms → Eukaryota → Sar1629Open in IMG/M
Ga0103834_1000431All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1606Open in IMG/M
Ga0103834_1003093Not Available798Open in IMG/M
Ga0103834_1004532All Organisms → cellular organisms → Eukaryota → Sar697Open in IMG/M
Ga0103834_1006570All Organisms → cellular organisms → Eukaryota → Sar609Open in IMG/M
Ga0103834_1006792All Organisms → cellular organisms → Eukaryota → Sar601Open in IMG/M
Ga0103834_1007025Not Available594Open in IMG/M
Ga0103834_1007110All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea591Open in IMG/M
Ga0103834_1007386All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes583Open in IMG/M
Ga0103834_1009005All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata541Open in IMG/M
Ga0103834_1009060All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata540Open in IMG/M
Ga0103834_1009797Not Available524Open in IMG/M
Ga0103834_1010548Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103834_1000226Ga0103834_10002265F064686MIKITHEEYQKMWYALNDGIITEQEWRVFCDALFNQVLEENKDVMVRLKFR*
Ga0103834_1000300Ga0103834_10003002F003081MFNDTRFGVEVFLMHLRGVDSLMLLSYMHILKKIYLKNYVTSESDG*
Ga0103834_1000411Ga0103834_10004111F001219PLETALFILLATIVTFVFLNPISKQLDERAEFIDYTLRKSTILLSFGYEKLSECVGLLTEEISEMNRQIKLVRDYTNSQFENEVSEVQKENMKILSQLKGDLAIKSAYLFSSLSEDLTQLTDKFFAKKFQSA*
Ga0103834_1000411Ga0103834_10004112F001145MNWNIFSFFVNSEEPFITFNTNIFDTNIINIGLLIGLLVYANKISFSVTLESRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVVYEKDKLDIVNTKYNTVKSGLLEVFSTSENLIKNFENRAFLSLQRYIVLTAASKILRKFFFLSEKEQSKLIELTISKLGEFKK*
Ga0103834_1000431Ga0103834_10004313F004358MFGLITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANASFQKAVFEGGSEQESMFTRGTRRIIALIGMLNFATISILCTIWPSTTLVTFTPPENKESISILYGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
Ga0103834_1002614Ga0103834_10026141F001583MYLKNYVSAESDG*LLGGYAFF*FHYIVALGISLSATHLSDLTLTIIANIF*SVFNFAYKTYYIVFTNKHLNTDQLTRLMMFHYFTP*YYLYLVKLHALFCHES*DSDSGENVYEDKSGTYLS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLAALPIIYNLYNSNNNYLSIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEG
Ga0103834_1003093Ga0103834_10030932F051986MTAITQTTYNVTCKVCAVIAKGFKQLVRKIAYGMQMSANQRVARELVHLGFNQQKEMAQILQRMNDKTNEEYHGRY*
Ga0103834_1003839Ga0103834_10038391F000237SGENTYEDKTGTYVS*FYDAFLKEIQDA*Y*VTYIYLYFFLHHFNGSTINYFFFER*NIAELDEIRFYGVAPH*YFRPYMGLLVISPTHYEGLM*MGLFLGSLAFLPVIYNVYNSMHKYVATIPMQNSILQTSAFIFFMLSLFCANSMLPCGRYYYEPEGGYVGNPLVKFSFQYMYLYLC*ILHHLDLIDHYIFYLTQTFLRKLTLDLNPRVSARKTNV*
Ga0103834_1004532Ga0103834_10045321F027191MIRKERKERLKNEIEKPLLHSINLVRVVRLLISPKKKRMKIEVSKTMKPAFLLGTAFNIAYWHRKYHSGTICKGVSNALTSKALSGCEREDTPK*
Ga0103834_1006570Ga0103834_10065702F013645MKINIEVNNIMNPAFLLGTAFNIAYWHRKYHSGTICKGVTNPQTSNALSGCDKE*
Ga0103834_1006643Ga0103834_10066431F030104MTFDDNQEEVIEFIDTGYFYFFILITIYICFKYSIHYFSFLEASIADGKAVSYIVQAGKDTINSGSIFLRFYLLALRINIYDFLDDVMDSYYCLLIDFDDDEYFSELLLSIHGTLFFTNDNHDDRSFL
Ga0103834_1006792Ga0103834_10067921F001219MIFPTTIFINKLFDFDLTFVIELGFFITLAIIVTFKFINPISKEIDDRAEFINYNLRKSTILLTFGYEKLSDCISLLTQEINELNRQTKLTRNYCNSNFENEISSIQKENLKILSELKGDLSIKSAFLFSNISNDLNSLTDKFFEKKFQSVS*
Ga0103834_1007025Ga0103834_10070252F001478MFRYKDGFVTNEKGKVIAVDGGIDNENRNIVMENKNGQVHQRWKIVYADEYEGEPTKGQFNKRFGLYVERDFYVVSKLPDGRYLDLINNRNMVIKVPNGRRTQV
Ga0103834_1007110Ga0103834_10071101F003081ECFYMHVRGVDTLMLLSYMHILKKIYLKNYVLAESDG*
Ga0103834_1007386Ga0103834_10073862F004358FAGIADAKAAAAKRELARDLAMSKASIETQQAIFGESNEEISMFTRSTRRIIALIGMCNFFVISVLCTIWPSTTLVTFTPPESKEAWSLAWGLIKIPSGADVTTAITTGHIALVSVATLGAIIGFYFTPGGKN*
Ga0103834_1009005Ga0103834_10090051F005505EIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLFYLVLIAALPVIYNIYNSYGKYVSAIPMQNSLLQTTTFILFMMSLYCSASILPCGRYYYEPEGGYVGNP*IKFSYQYIYLYLA*ILHHLDVLDHHIYQFSSTFTRRTNSYNLRVST*RSATSNKNFS*
Ga0103834_1009060Ga0103834_10090601F005505*FYDAFLKEIQDA*Y*TIFVFAYFFMHHFNGGTVNYFFFER*NIAELDEIRFYGVAPH*YFRPFMGVLTISPTHYEGLM*FAL*LILLAFLPLINTLYNPHNKYTAVIPMQNSLLQTTFFILFMMSLYCAASMLPCGRYYYEPEGGYVGNP*VKFSYQYGYLYLM*FIHHLDALDHYIF
Ga0103834_1009797Ga0103834_10097972F006008MPLVKKDITLAAGATSEQILAGTTYEYVSQNTRLIV
Ga0103834_1010548Ga0103834_10105481F090413MKYKHIKGLQLQKPSYLNTSNQKIRELLAGKEVELEKENLEEFESLGVQVQPVK
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