Sample 3300010285

3300010285: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG

Overview

Basic Information
IMG/M Taxon OID	3300010285 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121361 \| Gp0153725 \| Ga0134091
Sample Name	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	273937062
Sequencing Scaffolds	41
Novel Protein Genes	42
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
Type	Engineered
Taxonomy	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: Dartmouth College, New Hampshire
Coordinates	Lat. (^o)	43.726	Long. (^o)	-72.1429	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000412	Metagenome / Metatranscriptome	1169	Y
F001938	Metagenome / Metatranscriptome	614	Y
F010244	Metagenome / Metatranscriptome	306	Y
F019116	Metagenome / Metatranscriptome	231	Y
F020859	Metagenome / Metatranscriptome	221	Y
F021959	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F042860	Metagenome / Metatranscriptome	157	Y
F059780	Metagenome	133	Y
F063614	Metagenome / Metatranscriptome	129	Y
F069582	Metagenome / Metatranscriptome	123	N
F075996	Metagenome / Metatranscriptome	118	N
F079533	Metagenome / Metatranscriptome	115	N
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F089691	Metagenome / Metatranscriptome	108	Y
F091897	Metagenome / Metatranscriptome	107	Y
F093744	Metagenome / Metatranscriptome	106	Y
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N
F103108	Metagenome / Metatranscriptome	101	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134091_1000373	All Organisms → cellular organisms → Bacteria	42509	Open in IMG/M
Ga0134091_1001108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	22230	Open in IMG/M
Ga0134091_1002164	All Organisms → cellular organisms → Bacteria	13892	Open in IMG/M
Ga0134091_1003008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10673	Open in IMG/M
Ga0134091_1007916	All Organisms → Viruses → Predicted Viral	4814	Open in IMG/M
Ga0134091_1008917	All Organisms → Viruses → Predicted Viral	4310	Open in IMG/M
Ga0134091_1012641	All Organisms → Viruses → Predicted Viral	3099	Open in IMG/M
Ga0134091_1014325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2744	Open in IMG/M
Ga0134091_1014511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2708	Open in IMG/M
Ga0134091_1014732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2665	Open in IMG/M
Ga0134091_1015256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2580	Open in IMG/M
Ga0134091_1015685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2513	Open in IMG/M
Ga0134091_1021368	Not Available	1860	Open in IMG/M
Ga0134091_1022278	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
Ga0134091_1022920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1742	Open in IMG/M
Ga0134091_1023812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1679	Open in IMG/M
Ga0134091_1025024	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
Ga0134091_1025061	All Organisms → Viruses → Predicted Viral	1604	Open in IMG/M
Ga0134091_1030880	Not Available	1324	Open in IMG/M
Ga0134091_1031580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1298	Open in IMG/M
Ga0134091_1031595	All Organisms → Viruses → Predicted Viral	1297	Open in IMG/M
Ga0134091_1032531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1263	Open in IMG/M
Ga0134091_1032609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1261	Open in IMG/M
Ga0134091_1034501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1199	Open in IMG/M
Ga0134091_1037230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1121	Open in IMG/M
Ga0134091_1038738	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
Ga0134091_1040401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1042	Open in IMG/M
Ga0134091_1043116	Not Available	986	Open in IMG/M
Ga0134091_1043222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	985	Open in IMG/M
Ga0134091_1044224	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
Ga0134091_1052761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	835	Open in IMG/M
Ga0134091_1054516	Not Available	812	Open in IMG/M
Ga0134091_1060419	Not Available	746	Open in IMG/M
Ga0134091_1064321	Not Available	710	Open in IMG/M
Ga0134091_1067226	Not Available	685	Open in IMG/M
Ga0134091_1070191	Not Available	663	Open in IMG/M
Ga0134091_1081665	Not Available	590	Open in IMG/M
Ga0134091_1096105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	521	Open in IMG/M
Ga0134091_1099620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	507	Open in IMG/M
Ga0134091_1100675	Not Available	503	Open in IMG/M
Ga0134091_1100939	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134091_1000373	Ga0134091_100037317	F020859	MKKIIAKEVNPNHVDFSYYFDDDGLKSAGGENCAVYIVPGDRRRYGGFNIEEYEEIEEKAKAIIDGFRDVSDKWTNGYTTYKEVMEDNAIPYTSRRCHLLKEWTEYANPYDPGFIAEFLTITTGEKWEVKSFTGYSQGDYCDVVYCTKHYTPEHIDEIGKFWLGCGTEFCIDDCYGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVTDYKLMD*
Ga0134091_1001108	Ga0134091_100110837	F059780	MFTKNIRNKGENKMYLIGIKNGVHPLGNTGTLITRYKAPYKIREIAQRFATMYSLTEVYALRSYPQKLCELTGKKFVEYVRLHGIRYV*
Ga0134091_1002164	Ga0134091_100216419	F063614	MNRRLQKMTYARLRITIDTLVKTGLEKANVLGIEDAQNDLWQIYKMCEELLRFWEDEITDDQDYELEEIIAELPLLQQV*
Ga0134091_1003008	Ga0134091_100300813	F101010	MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF*
Ga0134091_1007916	Ga0134091_10079169	F091897	MIGSSMNSFPNTQYQCCKCGKDLGNKYSRLKGKKQPDVNIIKGKQYCNKCADKYWND*
Ga0134091_1008917	Ga0134091_10089175	F091897	MIGSSMSCFPNTQYQCCKCGKKLGDKYSRLKGKKQPTVIIINDKQYCSKCADKHWDYQIKRM*
Ga0134091_1012641	Ga0134091_10126418	F038199	GDIMEYTQAEFLQLIQQYNSTDRKVIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSAKNIPLFEQALNIAVKFNFDITEFLK*
Ga0134091_1014325	Ga0134091_10143259	F038199	MEYTQAEFLQIIKQYNNTDRKVIKANLKRIMHIYGIKPADIISLGYSPRNVYAWTNKSTKNIPLFEQALNIAVNFNFSITEFLK*
Ga0134091_1014511	Ga0134091_10145113	F021959	MAEQEVARLQEQIKTLFSDVDELKTDVKEIKSQLANRLPLWATMLISALTGVIGWLIR*
Ga0134091_1014732	Ga0134091_10147325	F001938	MIEKIYKSKYMAICDNCGTGQECDSWADVIDFMNEEGWKKRLVDGEFKHYCPECQDRIRREKQGTRHMT*
Ga0134091_1015256	Ga0134091_10152564	F088752	MKGLQSVYNQITTILKENNVLMNITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE*
Ga0134091_1015685	Ga0134091_10156852	F093744	MGFKIGDRVEVNYPVDDFQGHIGIVKKIITDTELIPGKTVVICYWAFLDKEIAFYESSLNLI*
Ga0134091_1019286	Ga0134091_10192861	F105007	NYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEEEWVDMIR*
Ga0134091_1021368	Ga0134091_10213681	F075996	NSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGNFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEKILDGLSEHDDETLLR*
Ga0134091_1022278	Ga0134091_10222785	F010244	MTHKVKFTHSDKSRAHIGRAKVREGKEVYRHPEGRYIVLEFQGQSGKFREAFWPEEVVKDKLFL*
Ga0134091_1022920	Ga0134091_10229204	F093744	MNAQEGGCEMGLKIGDRVEVSYPVDDFPGHIGIVKEIKESVEFPGSKIVVCFWPFLGKEIGFFEDSLDLV*
Ga0134091_1023812	Ga0134091_10238123	F010244	MTHKVKFTHSDKSHAHINRAEVREGKEVYRHPKNYFIVIEFQGAGGKFREAFWPEQILDEIMKVG*
Ga0134091_1025024	Ga0134091_10250243	F010244	RGMEAFLPGMSGGQRTMTHKVKFTHSDKSRAHINRAKVREGKEVYRHPRGHFVVLEFQGESGKFREAFWPEEVKVG*
Ga0134091_1025061	Ga0134091_10250612	F099151	MRFREEIYKENGEIIKKFYIDDKEVTQDVYFNLTDELYENTKLKQDDHNEEICNCEECQYLLELINEIRQSSDSEALAILKDEIEFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELENLYENGSLHEYNEDS*
Ga0134091_1030880	Ga0134091_10308802	F020859	MRKIIAKEVNPSHVDFSYYFDDDGLKSVGGENCAVYIIPADRRGYNGFNMEEYLEIEEKAEAIIDGFRNVSDKYANFKEVMEYNGIPYTSRKCHLLRKWAEYANPYDTSDIAAFLTITTGEEWAVKAFTGYSQGDYCEVVYCINHYTPEHINEIGKFWLGCGTEFCIDGCYGYYVPDTIRWEEGETLRNYLAELYGCKPEELEIYLYDGEHVVTDYKLMD*
Ga0134091_1031580	Ga0134091_10315804	F021959	EIVSEQDIARLQEQIKTLFGDVNELKEDVKEIKQQLANRLPLWATMLISALTGVIGWLIR
Ga0134091_1031595	Ga0134091_10315953	F087072	MKSRVFTKRVFSLELSEEELGIIAGALYCADSVDVKCFVDKYKYPCDGYNFDEIAECKEKLSEEINKLIENR*
Ga0134091_1032531	Ga0134091_10325312	F019116	SIMLSARDKRLLELLAKKEARSQTAEIEYLIRRRAEELKIEEP*
Ga0134091_1032609	Ga0134091_10326092	F087072	MKSRVFTKRIFSLELSEEELGIIAGALYCANSVDVKCFVDKYKYPCDGYNFDEIAECKEKLSEEINKLIENR*
Ga0134091_1034501	Ga0134091_10345013	F042860	LAGLTREEIMKRIKIEDARIANADRNIEGLILQKNKSLDEQARLFALLEALPDKEPAEETGA*
Ga0134091_1037230	Ga0134091_10372301	F101010	MFGGFYMFIIRDGYATVWSVEDKGNFVRGRISTSEKDKDGKYINSNWFAIFVGKAKEPALALSTKDRIKIISGKISNTTTGEGEDRKSFVNVVIFDFENLSNSQ
Ga0134091_1038738	Ga0134091_10387381	F089691	NLGGYHMEKNIKYIIREVPPEQSDFSFYFDDDGLTEKGGDYCCNLFIVAQSRNSSGFNEKEYQNIQNEIENLLEMYSDIVNKSSYAQYSSVGAMLFDLGLINSIHNTRRIKEITEWLKACLTWGNTSQTRTLAEYEPEETAAEYLTFKTGKKWATDSAYGYSQGDYVKMIYCPEYYKDGVKHYGEIWLGAGKEFYTIELDENGEEINTCYGYIIADCQARNDEDYKKLVCEWAGIPEDETRLEMIDGYKTVTQYTYRTV*
Ga0134091_1040401	Ga0134091_10404011	F001938	TCDNCGTGQECDSWSDVMDFMNYEGWKKRLVDGEWKHYCPECQENEQIIERRVEKDGK*
Ga0134091_1043116	Ga0134091_10431162	F038199	MEYTQAEFLQLIQQYNSTDRSIIKANLKRIMDIYNIKPANIISLGYSPRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK*
Ga0134091_1043222	Ga0134091_10432222	F063614	MSYVRLKFTIQTLVDTALEKVNVLGVEDAQNDSCQIYDICQELLRFWEDELTEERIDELEEIIAELPLLQRV*
Ga0134091_1044224	Ga0134091_10442242	F010244	MTYKVKFTNSDKSRAHITSAKIREGREVYRHPRGRFVVLEFEGESGKFREAFWPEQVEKAI*
Ga0134091_1052761	Ga0134091_10527611	F001938	NKYMVTCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEFKHYCPECQEG*
Ga0134091_1054516	Ga0134091_10545162	F038199	MQYTQAEFLQIIQQYNSTDRKIIKANLKHIMDIYNIKPADIISLGYSPRNVYAWTNKSTNNIPLFGQALHIAVHFDFSITEFLK*
Ga0134091_1060419	Ga0134091_10604191	F069582	IACLLSVINIRTTDGVLIDIITSCETPSVLMNLLRSRCVVVLVKFLKVLVTCRKYGTRQA
Ga0134091_1064321	Ga0134091_10643211	F079533	VSTQLVLNKYNTNYEALRLADSTALAFKCWQNFIKAIYYELMKPLTQLHSN
Ga0134091_1067226	Ga0134091_10672261	F001938	MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEFKHY
Ga0134091_1070191	Ga0134091_10701911	F099151	MKFREETYKENGRIIKKYFIDDKEVTQDVFFKLTDELYENTKFIQDEHPDEICNCDDCQYLLDLVREIKIASDSEALDILKNEIDFRVREAYIEGQHVLANELGNSLLKHAVKLEDELDN
Ga0134091_1081665	Ga0134091_10816651	F103108	MEKTELIIPFTKKLAEAAGLAKETEKGEKFFRCLRMPGYFPPKGDIESFAERLCKLLLEKHEEALLYTENGLRRVLEDFPAAEEILEKLSSSWEEDAPDAYAVVSRSDDEWAVLFGYEDGVEAVLCKKGRTVRVGADE
Ga0134091_1096105	Ga0134091_10961051	F001938	MIEKIYKNKYMAICDNCGEGQEYDSWTDVIEFMREEGWKKKLVDGEWKHYCPECQESGVKQDAAI*
Ga0134091_1099620	Ga0134091_10996203	F001938	MIEKIYKNKRMAICDNCGEGQECDSWAEVIDFMREEGWRKRLIDGEWKHFCPECRGVKEP
Ga0134091_1100675	Ga0134091_11006751	F000412	MSGYSIVFIPTGKYSRTCWNRGREYYPVGMKTPIEYRDIFFKYNSPYHIEMGTYILIDLLAGGSVAPAQPTSLRNGIFTQTCSTCLEGPHWKDSSDAHPCRAIDRAEPVIPSPCSLKAITHATGSKIGSSQYRWNRST*
Ga0134091_1100939	Ga0134091_11009392	F001938	MIEKIYKNKYMAICDNCGEGQECDSWTDVLDFMNTEGWKKRLVDGEWKHFCPECQESEGEEG*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010285: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences