Basic Information | |
---|---|
IMG/M Taxon OID | 3300014547 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121297 | Gp0151587 | Ga0134415 |
Sample Name | Human fecal microbial communities from obese patients in Germany - AS65_18 |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Hohenheim |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 96764056 |
Sequencing Scaffolds | 2 |
Novel Protein Genes | 2 |
Associated Families | 2 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Human Fecal Microbial Communities From Obese Patients In Germany |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | Germany | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F076064 | Metagenome | 118 | N |
F097172 | Metagenome / Metatranscriptome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0134415_101699 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes senegalensis | 6541 | Open in IMG/M |
Ga0134415_113922 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 1186 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0134415_101699 | Ga0134415_1016994 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVTLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNEVKRPPRPALKFY* |
Ga0134415_113922 | Ga0134415_1139222 | F097172 | LIQIYLQNPKEGFIMKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKSVTSVYKYHLEGCDKKGYVMDGFSKSSFYKDLNSLPAVKMGKTTINVPAVTSSVKSISKEKGNPIYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKIKFTTRLKKGHTYVFVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYRK* |
⦗Top⦘ |