x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300021306
3300021306: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3
Overview
Basic Information
IMG/M Taxon OID 3300021306 Open in IMG/M GOLD Reference Gs0118397 | Gp0242241 | Ga0214508 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 227162177 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter smithii 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 1 Not Available 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F086383 Metagenome / Metatranscriptome 110 N F093041 Metagenome / Metatranscriptome 106 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0214508_1002872 Ga0214508_10028725 F086383 MTLHIALDGIYVNVNHMIIQKLAEYLTQNSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSIAWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDPEVEARLISNEKKRLGL Ga0214508_1004899 Ga0214508_100489910 F086383 KTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL Ga0214508_1022931 Ga0214508_10229311 F086383 MIEKLAEYLTQKSYTVKTIFPMQNEMMQHILTSYDLTISEKALLSALDRSIIYNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKKRLGL Ga0214508_1052758 Ga0214508_10527582 F093041 MMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAI
