Metagenome / Metatranscriptome Family F093041

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093041
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	64 residues
Representative Sequence	MMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAI
Number of Associated Samples	41
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.46 %
% of genes near scaffold ends (potentially truncated)	35.85 %
% of genes from short scaffolds (< 2000 bps)	67.92 %
Associated GOLD sequencing projects	35
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.811 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (54.717 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut (85.849 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.91% β-sheet: 0.00% Coil/Unstructured: 34.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13347	MFS_2	2.86
PF00535	Glycos_transf_2	1.90
PF00486	Trans_reg_C	1.90
PF14198	TnpV	1.90
PF09479	Flg_new	1.90
PF01476	LysM	1.90
PF00550	PP-binding	0.95
PF00072	Response_reg	0.95
PF13727	CoA_binding_3	0.95
PF04227	Indigoidine_A	0.95
PF12685	SpoIIIAH	0.95
PF00501	AMP-binding	0.95
PF13421	Band_7_1	0.95
PF00496	SBP_bac_5	0.95
PF00731	AIRC	0.95
PF01668	SmpB	0.95
PF03449	GreA_GreB_N	0.95
PF00583	Acetyltransf_1	0.95
PF03483	B3_4	0.95
PF01569	PAP2	0.95
PF01197	Ribosomal_L31	0.95
PF00395	SLH	0.95
PF13472	Lipase_GDSL_2	0.95
PF02922	CBM_48	0.95
PF08531	Bac_rhamnosid_N	0.95
PF14276	DUF4363	0.95
PF02397	Bac_transf	0.95
PF13186	SPASM	0.95
PF00596	Aldolase_II	0.95
PF00135	COesterase	0.95
PF03553	Na_H_antiporter	0.95
PF13333	rve_2	0.95
PF00886	Ribosomal_S16	0.95
PF02826	2-Hacid_dh_C	0.95
PF02583	Trns_repr_metal	0.95
PF00113	Enolase_C	0.95
PF01471	PG_binding_1	0.95
PF14681	UPRTase	0.95
PF00005	ABC_tran	0.95
PF00403	HMA	0.95
PF04203	Sortase	0.95
PF00160	Pro_isomerase	0.95
PF00528	BPD_transp_1	0.95
PF00150	Cellulase	0.95
PF04525	LOR	0.95
PF03721	UDPG_MGDP_dh_N	0.95
PF01580	FtsK_SpoIIIE	0.95
PF01424	R3H	0.95
PF13416	SBP_bac_8	0.95
PF03631	Virul_fac_BrkB	0.95
PF13187	Fer4_9	0.95
PF05592	Bac_rhamnosid	0.95
PF01381	HTH_3	0.95
PF09365	DUF2461	0.95
PF00701	DHDPS	0.95
PF01547	SBP_bac_1	0.95
PF01208	URO-D	0.95
PF14534	DUF4440	0.95
PF02595	Gly_kinase	0.95
PF02447	GntP_permease	0.95
PF08769	Spo0A_C	0.95
PF01553	Acyltransferase	0.95
PF01649	Ribosomal_S20p	0.95
PF00753	Lactamase_B	0.95
PF10974	DUF2804	0.95
PF01699	Na_Ca_ex	0.95
PF00009	GTP_EFTU	0.95
PF01863	YgjP-like	0.95
PF02559	CarD_CdnL_TRCF	0.95
PF01969	Ni_insertion	0.95
PF00216	Bac_DNA_binding	0.95
PF00126	HTH_1	0.95
PF05105	Phage_holin_4_1	0.95
PF08282	Hydrolase_3	0.95
PF13173	AAA_14	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	1.90
COG2610	H+/gluconate symporter GntT or related permease, GntP/DsdX family	Carbohydrate transport and metabolism [G]	1.90
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.95
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	0.95
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.95
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	0.95
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.95
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.95
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.95
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.95
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.95
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.95
COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.95
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.95
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.95
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.95
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	0.95
COG1641	CTP-dependent cyclometallase, nickel-pincer nucleotide (NPN) cofactor biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	Cell cycle control, cell division, chromosome partitioning [D]	0.95
COG1847	Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains	General function prediction only [R]	0.95
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.95
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.95
COG1929	Glycerate kinase	Carbohydrate transport and metabolism [G]	0.95
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	0.95
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.95
COG2313	Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)	Nucleotide transport and metabolism [F]	0.95
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.95
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.95
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.95
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.95
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.95
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	0.95
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	57.55 %
Unclassified	root	N/A	30.19 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.94 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	55.66 %
Unclassified	root	N/A	30.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.89 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	42.45 %
Unclassified	root	N/A	30.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39.62 %
Unclassified	root	N/A	30.19 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.94 %
unclassified Clostridia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6.60 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5.66 %
unclassified Eubacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales	3.77 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.94 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.94 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
unclassified Oscillospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae	0.94 %
Butyricicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	0.94 %
Robinsoniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.94 %
Oscillospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	0.94 %
Robinsoniella peoriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	0.94 %
unclassified Butyricicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus	0.94 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Clostridiales bacterium NK3B98	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	1.89 %
Clostridiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1.89 %
Butyricicoccus sp. OF13-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	0.94 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.94 %
Oscillospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	0.94 %
Robinsoniella peoriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	0.94 %
Lachnoclostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	0.94 %
Butyrivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	0.94 %
Ruminococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	0.94 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.94 %
Firmicutes bacterium CAG:103	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	0.94 %
uncultured bacterium Contig17	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2061766007\|rumenHiSeq_NODE_580528_len_55998_cov_5_536341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56048	Open in IMG/M
2061766007\|rumenHiSeq_NODE_580528_len_55998_cov_5_536341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56048	Open in IMG/M
2081372005\|SRM_contig48605	Not Available	571	Open in IMG/M
2088090000\|SRMUA_GMSDS1U03GR1NX	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	508	Open in IMG/M
2236876025\|CowRDRAFT01_c0174918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	615	Open in IMG/M
3300010163\|Ga0136175_10030176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8185	Open in IMG/M
3300010163\|Ga0136175_10204845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. OF13-6	1577	Open in IMG/M
3300010282\|Ga0129307_1010927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3287	Open in IMG/M
3300010282\|Ga0129307_1023903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1653	Open in IMG/M
3300010282\|Ga0129307_1024543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1618	Open in IMG/M
3300014043\|Ga0120385_1126998	Not Available	539	Open in IMG/M
3300014047\|Ga0120381_1017658	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300018495\|Ga0187908_10896536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	918	Open in IMG/M
3300021254\|Ga0223824_10026398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	5455	Open in IMG/M
3300021254\|Ga0223824_10047194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3967	Open in IMG/M
3300021254\|Ga0223824_10067269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3284	Open in IMG/M
3300021254\|Ga0223824_10083125	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300021254\|Ga0223824_10088396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2831	Open in IMG/M
3300021254\|Ga0223824_10260693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1530	Open in IMG/M
3300021254\|Ga0223824_10586212	Not Available	898	Open in IMG/M
3300021254\|Ga0223824_10708735	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300021254\|Ga0223824_10757270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	747	Open in IMG/M
3300021254\|Ga0223824_10812157	Not Available	709	Open in IMG/M
3300021255\|Ga0223825_11127816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6228	Open in IMG/M
3300021255\|Ga0223825_12584076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	4540	Open in IMG/M
3300021256\|Ga0223826_10183724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1837	Open in IMG/M
3300021256\|Ga0223826_10835621	Not Available	666	Open in IMG/M
3300021306\|Ga0214508_1052758	Not Available	520	Open in IMG/M
3300021387\|Ga0223845_10635418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1811	Open in IMG/M
3300021387\|Ga0223845_11258552	Not Available	1036	Open in IMG/M
3300021387\|Ga0223845_12471157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1226	Open in IMG/M
3300021387\|Ga0223845_12742381	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium Contig17	744	Open in IMG/M
3300021387\|Ga0223845_12881447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	645	Open in IMG/M
3300021387\|Ga0223845_12969105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17498	Open in IMG/M
3300021400\|Ga0224422_10058745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8434	Open in IMG/M
3300021400\|Ga0224422_10685986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3150	Open in IMG/M
3300021400\|Ga0224422_10963453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1718	Open in IMG/M
3300021400\|Ga0224422_11853687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	59192	Open in IMG/M
3300021400\|Ga0224422_12897490	Not Available	854	Open in IMG/M
3300021426\|Ga0224482_11128420	Not Available	529	Open in IMG/M
3300021431\|Ga0224423_10001545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	36381	Open in IMG/M
3300021431\|Ga0224423_10004390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18358	Open in IMG/M
3300021431\|Ga0224423_10008358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12039	Open in IMG/M
3300021431\|Ga0224423_10550924	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300022601\|Ga0216345_10525010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	661	Open in IMG/M
3300023707\|Ga0257072_1002979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12599	Open in IMG/M
3300024270\|Ga0257091_10984702	Not Available	896	Open in IMG/M
3300024337\|Ga0255060_10249284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	871	Open in IMG/M
3300024337\|Ga0255060_10351230	Not Available	733	Open in IMG/M
3300024337\|Ga0255060_10624495	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300024342\|Ga0255061_10263373	Not Available	893	Open in IMG/M
3300024342\|Ga0255061_10343669	Not Available	777	Open in IMG/M
3300024342\|Ga0255061_10421430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	697	Open in IMG/M
3300024345\|Ga0255062_10544326	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300024486\|Ga0255059_10633741	Not Available	503	Open in IMG/M
3300026525\|Ga0256870_1019436	Not Available	2877	Open in IMG/M
3300026549\|Ga0256404_1192606	Not Available	973	Open in IMG/M
3300028048\|Ga0256405_10007483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16409	Open in IMG/M
3300028048\|Ga0256405_10043334	All Organisms → cellular organisms → Bacteria	3863	Open in IMG/M
3300028048\|Ga0256405_10062690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2982	Open in IMG/M
3300028048\|Ga0256405_10094864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2242	Open in IMG/M
3300028048\|Ga0256405_10114066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1976	Open in IMG/M
3300028048\|Ga0256405_10118227	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300028048\|Ga0256405_10179993	Not Available	1433	Open in IMG/M
3300028048\|Ga0256405_10355653	Not Available	849	Open in IMG/M
3300028591\|Ga0247611_10080877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3333	Open in IMG/M
3300028591\|Ga0247611_10442565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1399	Open in IMG/M
3300028591\|Ga0247611_10577778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	1201	Open in IMG/M
3300028591\|Ga0247611_10754957	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300028591\|Ga0247611_11731035	Not Available	595	Open in IMG/M
3300028591\|Ga0247611_11839748	Not Available	571	Open in IMG/M
3300028797\|Ga0265301_10611554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:103	805	Open in IMG/M
3300028797\|Ga0265301_11128600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	560	Open in IMG/M
3300028833\|Ga0247610_10173845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2202	Open in IMG/M
3300028833\|Ga0247610_10792348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	974	Open in IMG/M
3300028833\|Ga0247610_11262165	Not Available	727	Open in IMG/M
3300028833\|Ga0247610_11568315	Not Available	629	Open in IMG/M
3300028886\|Ga0256407_10021829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	7624	Open in IMG/M
3300028886\|Ga0256407_10639018	Not Available	770	Open in IMG/M
3300028888\|Ga0247609_10769369	Not Available	1008	Open in IMG/M
3300028888\|Ga0247609_11042511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	838	Open in IMG/M
3300028888\|Ga0247609_12036456	Not Available	536	Open in IMG/M
3300028888\|Ga0247609_12164970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	513	Open in IMG/M
3300031555\|Ga0318466_12933399	Not Available	576	Open in IMG/M
3300031867\|Ga0326511_11059425	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300031867\|Ga0326511_11135170	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031867\|Ga0326511_11959063	Not Available	528	Open in IMG/M
3300031992\|Ga0310694_10677930	Not Available	1039	Open in IMG/M
3300031993\|Ga0310696_11053872	Not Available	849	Open in IMG/M
3300031994\|Ga0310691_10306923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1745	Open in IMG/M
3300031994\|Ga0310691_10655178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio	1147	Open in IMG/M
3300031994\|Ga0310691_10727210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1078	Open in IMG/M
3300031994\|Ga0310691_11160965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium NK3B98	799	Open in IMG/M
3300032007\|Ga0310695_10008534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15790	Open in IMG/M
3300032007\|Ga0310695_10041997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4912	Open in IMG/M
3300032030\|Ga0310697_10025872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5366	Open in IMG/M
3300032030\|Ga0310697_10097424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2842	Open in IMG/M
3300032030\|Ga0310697_10165366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2214	Open in IMG/M
3300032030\|Ga0310697_10570842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1171	Open in IMG/M
3300032030\|Ga0310697_10876147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	906	Open in IMG/M
3300032030\|Ga0310697_11431356	Not Available	656	Open in IMG/M
3300032038\|Ga0326512_11294827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	520	Open in IMG/M
3300033463\|Ga0310690_11291190	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300033463\|Ga0310690_11309205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	794	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	88.68%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	10.38%
Stomach	Host-Associated → Mammals → Digestive System → Stomach	0.94%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	88.68%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	8.49%
Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum	1.89%
Unclassified	Host-Associated → Mammals → Digestive System → Stomach → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	54.72%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	28.30%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	5.66%
Capybara Group Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal	2.83%
Ictidomys Tridecemlineatus Cecum	Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Ictidomys Tridecemlineatus Cecum	1.89%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	1.89%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	1.89%
Rangifer Tarandus Platyrhynchus Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rangifer Tarandus Platyrhynchus Rumen	1.89%
Switchgrass-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2061766007	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470	Host-Associated	Open in IMG/M
2081372005	Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549	Host-Associated	Open in IMG/M
2088090000	Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549	Host-Associated	Open in IMG/M
2236876025	Switchgrass-associated rumen community WFO	Host-Associated	Open in IMG/M
3300010163	Cecal microbial community of the 13 lined ground squirrel in Duluth, Minnesota, USA. Combined Assembly of 10 SPs	Host-Associated	Open in IMG/M
3300010282	Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome	Host-Associated	Open in IMG/M
3300014043	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1248	Host-Associated	Open in IMG/M
3300014047	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003	Host-Associated	Open in IMG/M
3300018495	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2	Host-Associated	Open in IMG/M
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021306	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3	Host-Associated	Open in IMG/M
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300022601	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated	Open in IMG/M
3300023707	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 Spades (v2)	Host-Associated	Open in IMG/M
3300024270	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)	Host-Associated	Open in IMG/M
3300024337	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024342	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300026525	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300026549	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01	Host-Associated	Open in IMG/M
3300028048	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02	Host-Associated	Open in IMG/M
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028797	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04	Host-Associated	Open in IMG/M
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated	Open in IMG/M
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300031555	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2)	Host-Associated	Open in IMG/M
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated	Open in IMG/M
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated	Open in IMG/M
3300031993	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)	Host-Associated	Open in IMG/M
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032007	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)	Host-Associated	Open in IMG/M
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated	Open in IMG/M
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
_HiSeq_09664360	2061766007	Bovine Rumen	MAKSQEAFRRAALRRSKTARLFCHIFIAMSIGRMIERIIRCQTCRLAAKSIETSIDFANR
_HiSeq_09664380	2061766007	Bovine Rumen	MAKSQEAFRRAALRRSKTARLFCHIFIAMSIGRMIERIIRCQTCRLAAKSIETSIDFAIR
SRM_00400330	2081372005	Rangifer Tarandus Platyrhynchus Rumen	MIIDGEKPKSFSPRALLRSKTARLFCHILIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIR
SRMUA_05074510	2088090000	Rangifer Tarandus Platyrhynchus Rumen	MKLSSPFLACQQYHDDRKAKSQKAFRRAALLRSKTAPLFCPVLIAMSIGRMIQRIIRCQTCRLAAKSIETSIDIAIRCSL
CowRDRAFT01_01749182	2236876025	Switchgrass-Associated Bovine Rumen	MMAKSEKVFRRTALRRSKTARLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIRRSVHPEQETEGEKP
Ga0136175_100301761	3300010163	Ictidomys Tridecemlineatus Cecum	MLGTHNDYMMAKRHKAFRRAALLLSRTAMLFCHIFIAMSIAQMILSIICCQTCRLA
Ga0136175_102048452	3300010163	Ictidomys Tridecemlineatus Cecum	VNPIDFYAYARYNDYMMANRHKAFRRAALLLSRTAKLLCHIFIAMSIAQMILSIICCQTCRLTAKAIEDSIAFAMR*
Ga0129307_10109271	3300010282	Capybara Group Fecal	MMAKSQNAFRRAALRRSKTALLFCHISIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0129307_10239031	3300010282	Capybara Group Fecal	MLPLFHYNDYMMAKSQNAFRRAALRHSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLVAKSIELSIDFAIR*
Ga0129307_10245431	3300010282	Capybara Group Fecal	DYMMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAIR*
Ga0120385_11269981	3300014043	Sheep Rumen	MMAKSQKAFRRAALRRSKTAWLFCHILIAMSVGRMIQRIIRCQTCRLAAKSIESSIDFAIR*
Ga0120381_10176582	3300014047	Sheep Rumen	YMMAKRRKAFRRAALLLSAAARLWRHIFIAMSIARMIHRIIRCQTCRLATKSIEFSIDFVMR*
Ga0187908_108965361	3300018495	Goat Feces	ITDNDYKMAKNEKVFRRAVLRRSKTAWLFCHIFIAINIRRMIHGIIRGQTCRLAAKSIEFSIDFAIR
Ga0223824_100263984	3300021254	Cattle And Sheep Rumen	MMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLVAKSIESSIDFAI
Ga0223824_100471942	3300021254	Cattle And Sheep Rumen	MMAERHTAFRRAAWRLRAAAGLLRHIFIAMSIARMMIKIIRCQTCRLATRSIEFSIDLAM
Ga0223824_100672695	3300021254	Cattle And Sheep Rumen	MMAKSQKAFRCAALPRSKTARLFCHILIAMSIGRMIMKIIRCQTCRLAAKSIELPIDFAI
Ga0223824_100831253	3300021254	Cattle And Sheep Rumen	MTKSQKAFRRAAKLGSKTAWLFCRIFIAMSIGRMMERIIRCQTCGLAAKSIEASIDFTIR
Ga0223824_100883961	3300021254	Cattle And Sheep Rumen	MNYFAADDNDYMMAKSEKAFRRAALLRSKTALLFCHILIAKSIGRMIYRIIRCQTCRLAA
Ga0223824_102606933	3300021254	Cattle And Sheep Rumen	MIIRWRKAKIAFRRAALRRSKTARLFCHILIAMSIGRMIQRIIRCQACRLAAKSIDPPIDFAIR
Ga0223824_105862122	3300021254	Cattle And Sheep Rumen	MTAKSEYAFRRAALLRSETALLFCHIRIAMSIGRMIERIIRCQTCRLAA
Ga0223824_107087351	3300021254	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIQGIIRCQTCRLAAKSIEFSIDFAI
Ga0223824_107572702	3300021254	Cattle And Sheep Rumen	MAKRRRAFRRAALLLSAAGWLLRRIFIAMNIARMIQRIILHKTYRFVEKTIEKSIVFSRR
Ga0223824_108121572	3300021254	Cattle And Sheep Rumen	MAKSPKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDF
Ga0223825_111278166	3300021255	Cattle And Sheep Rumen	MMAKSSKAFRRAASRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAI
Ga0223825_125840766	3300021255	Cattle And Sheep Rumen	MMANSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRFAAKSIEASIDFSI
Ga0223826_101837242	3300021256	Cattle And Sheep Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFLAMSIGRMIHRIIRCQTYRLAAKSIEASIDFAI
Ga0223826_108356212	3300021256	Cattle And Sheep Rumen	HLTVEHNEYRIAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0214508_10527582	3300021306	Goat Feces	MMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAI
Ga0223845_106354183	3300021387	Cattle And Sheep Rumen	NDYMVAKSRQAFRRAALLRSKTASLFFHIYIAMNIGRMIWRIIRCQTCRLAATSIEYSIDVASR
Ga0223845_112585522	3300021387	Cattle And Sheep Rumen	MMAKSQKAFRRAALRRSKTAALFCHILIVMNIGRMILRIIRCQICHLAAKSIDFSIDFAI
Ga0223845_124711573	3300021387	Cattle And Sheep Rumen	ETLKAFRRAALRLSTVETLLCQISNAMSIARMISQIIRCQTCRLAAKSIEISIDFAMR
Ga0223845_127423813	3300021387	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIFRIIRCQTTSLAAKSIESSIDFAIRRSL
Ga0223845_128814471	3300021387	Cattle And Sheep Rumen	MAKSQKAFRRAALQRSKTAPLFCPIFLAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIQ
Ga0223845_1296910511	3300021387	Cattle And Sheep Rumen	MKAKSQKAFRRAALLRSKTAWLFCHIFIAMSIGRMILRIIRCQTCRLAAKSIESSIDFAI
Ga0224422_100587458	3300021400	Cattle And Sheep Rumen	MMAKSEKAFRRVALLRSKTALLFCHILIAMSIGRMIFKIIRCQTCRLAAKSIEYSIDFAI
Ga0224422_106859862	3300021400	Cattle And Sheep Rumen	MMAKSQKAFHRAALRRSKTAALFCHILIAMNIRRMIHRIIRCQTCRLAAKSIESSIDFAI
Ga0224422_109634532	3300021400	Cattle And Sheep Rumen	MMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAI
Ga0224422_118536874	3300021400	Cattle And Sheep Rumen	MNYFAADDNDYMMAKSEKAFRRAALLRSKTALLFCHILIAKSIGRMIYRIIRCQTCRLAAKSIEFSIDFAIR
Ga0224422_128974901	3300021400	Cattle And Sheep Rumen	MAKRQKAFRRAALLLRTAEQLLCQILIAMSIARMIQKIIRCETCRLAAKSIEFSIDFAMR
Ga0224482_111284202	3300021426	Cattle And Sheep Rumen	RILSSYNDYMMAKSSKAFRRAALRRSKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFAIR
Ga0224423_100015458	3300021431	Cattle And Sheep Rumen	MMAKSQKAFRRAALPRSKTARLFCHILIAMSIGRMIERIIRCQTCRLAAKSIETSIDLAIRWSR
Ga0224423_1000439017	3300021431	Cattle And Sheep Rumen	MTAKSEYAFRRAALLRSETALLFCHIRIAMSIGRMIERIIRCQTCRLAAKSIEFSIDFA
Ga0224423_100083581	3300021431	Cattle And Sheep Rumen	MMAKSEKAFRRAALLRSKTALLFCHIRIAMSIGRMIERIIRCQTCRLAAKSIEFSIDFA
Ga0224423_105509243	3300021431	Cattle And Sheep Rumen	MAKSEKAFRHAALLRSKTALLFCHILIAMSVGRMIQRIIRCQTFRLAAKTIESSIVFTIR
Ga0216345_105250102	3300022601	Goat Feces	MAKNEKVFRRAVLRRSKTAWLFCHIFIAINIRRMIHGIIRGQTCRLAAKSIEFSIDFAI
Ga0257072_100297910	3300023707	Goat Feces	MLSPFPYNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0257091_109847023	3300024270	Goat Feces	MMAKSSKAFRRAALRRGKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSSEVSIDFAI
Ga0255060_102492841	3300024337	Rumen	SEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAIR
Ga0255060_103512302	3300024337	Rumen	MAKSYKAFRRAALLRSKTAQLFCHIFIAMSIERMIQRIIRCQTCRLAAKSIEVSIDFAIR
Ga0255060_106244952	3300024337	Rumen	MYGFLLVFLPDYYNKYMMAKKRTVFRRAALRHSKTAQLFCHIFIAMSIARMIQRIIRCQTCRLAAKSIEASIDFAIRWSL
Ga0255061_102633732	3300024342	Rumen	MRFHGYHYNDYLMAKSRKAFRRAASRRSKTAGLFCQIVIAMSIGRMIQRIIRCQTCRLAAKAIEFSIAFVVRRLL
Ga0255061_103436692	3300024342	Rumen	MAQPSQRSSRYNVYNDYMMAKSEYAFRRAALLRSKTAWLFCHILIAMSIGRMIFRIIRCQTCRLAAKSIEFSIDFAIR
Ga0255061_104214302	3300024342	Rumen	MMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAI
Ga0255062_105443261	3300024345	Rumen	LPLVDHDYMMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAFR
Ga0255059_106337411	3300024486	Rumen	MMAKSEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAI
Ga0256870_10194364	3300026525	Rumen	MAKRLLVFRRAALLLSTAEYLLCQICIAMSIARMIQKIIRCQTCRLAAKSIEFSIDFVMR
Ga0256404_11926062	3300026549	Rumen	RARNLSSPWKTNNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0256405_100074836	3300028048	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRLSAKSIEASIDFAI
Ga0256405_100433343	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLLAKSIELSIDFAI
Ga0256405_100626904	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLA
Ga0256405_100948641	3300028048	Rumen	MIAKSQKAFRRVALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIEPSIDFAI
Ga0256405_101140662	3300028048	Rumen	MTRDNDYMMAKSQKAFRRAALRRSKTALLFCHISIAMSIGRMMQRIIRCQTSRLAAKSIELSIDFAIR
Ga0256405_101182273	3300028048	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSFDFAI
Ga0256405_101799932	3300028048	Rumen	MMAKSQNAFRRAALRRSKTAPLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSIDFAI
Ga0256405_103556532	3300028048	Rumen	MAKSQKAFRRAALRRSKTAQKFCYIFIAMSIGRMIQRIVRCRTCRLAAKSIESLIDFAIR
Ga0247611_100808771	3300028591	Rumen	MAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESPLDFAIR
Ga0247611_104425652	3300028591	Rumen	MILEETNERYNDYMMAKSQKAFRRAALRRSKTARLFCHIFIAMSIRRMIQRIIRRQTCRLAAKSIESSIDFAI
Ga0247611_105777781	3300028591	Rumen	ANKAFRRAALRRSKTARLFCHIFIAMSIGRMIYIIIRCQTCRLAAKSIESSIDFAI
Ga0247611_107549572	3300028591	Rumen	MAKSQKAFRRAALLRSKTALLFCPIFITMSIGRMIQRIIRCQTCRLAAKSIEASIDLLTDDHYNGMYDTA
Ga0247611_117310352	3300028591	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRLAAKSIEASIDFAI
Ga0247611_118397483	3300028591	Rumen	MAKRRKAFRRAALQLSAVALLQRHILIAMSIARMIIKIIRRQTCRLAAKSIEASIDFAMR
Ga0265301_106115542	3300028797	Rumen	KNDNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0265301_111286002	3300028797	Rumen	MMAKRRKAFRRAALRLSKTATLFCHIFIEMSIGRMIFQIIRCQTCRLAAKTIEDSIVFAI
Ga0247610_101738453	3300028833	Rumen	MAKSQKAFRRAGLRRSKTARLFCQILIAMSIGQMIYEIICCQTCRLAAKSIETPIDFAIR
Ga0247610_107923481	3300028833	Rumen	FIYNDYMMAKRRKAFRRAALLLSAAAWLRRLIFIAMSIARMILRIIRRQTCRLAVKSIESSIDFT
Ga0247610_112621652	3300028833	Rumen	MMAKSQKAFRRAALRRSKTAKLFCHIFIAMSIGRMIHRIIRCQTYRFAAKSIEASIDFAI
Ga0247610_115683151	3300028833	Rumen	MRFHGYHYNDYLMAKSRKAFRRAASRRSKTAGLFCQIVIAMSIGRMIQRIIRCQTCRLAAKSIESSIDFALRCSLYKIVG
Ga0247610_117964412	3300028833	Rumen	ISLQIVLSFSRLLCYNNVYMMAKSEKAFRRAALLPGKTALLFCHIRIAMSIGRMIIRIIRCQTCRLAAKSIESSIDFAIR
Ga0256407_100218291	3300028886	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIELSIDFAI
Ga0256407_103401603	3300028886	Rumen	RLMSRDTFKYLSKRIPLLLISDNDYMMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIELSIDFAIR
Ga0256407_106390183	3300028886	Rumen	TAPSDNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0247609_107693692	3300028888	Rumen	MAKSEKAFRRAAELRSKTAQLFCHILIAMSIGRMIQRIIRCQACRLATKSIESPIDFAIR
Ga0247609_110425112	3300028888	Rumen	MMAERLKSFRRAALLLSAAAWLRRHIFIAMSIARMISGIIRCQNCRLAAKSIKIPIDFAV
Ga0247609_120364561	3300028888	Rumen	MAASHNDYMMAKRRKAFRRAALLLSAAAGLLRHIFIAMSIARMIIWIIRCQTYRLAAKSIETSIDFAM
Ga0247609_121649702	3300028888	Rumen	MAKSYKAFRRAALLRSKTAQLFCHIFIAMSIERMIQRIIRCQTCRLAAKSIEASIDFAIR
Ga0318466_129333991	3300031555	Goat Feces	MMAKSSKAFRRAALRRGKTAGLFCHIFIAMSIGRMIQRIIRCQTCRLAAKSIEFSIDFAI
Ga0326511_110594252	3300031867	Rumen	MLFPTFAVHNEYRMAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0326511_111351702	3300031867	Rumen	PLRHAALRHNDYMMAKSEKAFRRAALLRSKTALLFCHILIAMSIGRMIFRIIRCQTCRLAAKSIEYSIDFAIR
Ga0326511_119590631	3300031867	Rumen	DNDYKMAKSKKTFRRAALPRSKTALLFCHILIAMSIGQRIQRIICCQTCRLTAKSIIALIDFAIR
Ga0310694_106779302	3300031992	Rumen	LFLPLVDHDYMMAKSSKAFRRAALRRSKTAELFCHILIAMSIGRMIQTIIRCQTCRLAAKSIESSIDFAIR
Ga0310696_110538722	3300031993	Rumen	RWRIEMITGCFLCVNRPHNDYMMAKRRKAFRRTALRCSKTATLFCHVFIAMSIGRMIFQIIRCQTCRLAAKTIEVTIVFAIR
Ga0310691_103069232	3300031994	Rumen	MAKSQKAFRRATLWRSKTAVLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0310691_106551781	3300031994	Rumen	MQRSYNDYMMAKSQKAFRRAALLRSKTAWLFCHILIAMSIGRMILRIIRCQTCRLAAKSIEFSIDFAIR
Ga0310691_107272101	3300031994	Rumen	IRAPPRSAFFYNDYMMAKSQEAFRRAALPRSQTGSLFGHIFISMSIGRMTLWAIRCQTCRLAARTIEFAIVLAIR
Ga0310691_111609653	3300031994	Rumen	MTKSEKAFRRAALRRSKTARLFCHIFIAMSIGRMIQGIFRCQTCRLAAQSIESSID
Ga0310695_1000853415	3300032007	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIEPSIDFAI
Ga0310695_100419971	3300032007	Rumen	MMAKSQNAFRRAALRRSKTALLFCHIFIAMSIGRMIQRIIRCQTSRLAAKSIESSIDF
Ga0310697_100258724	3300032030	Rumen	MMAKRLKAFRRAALLLSAAAWLRRHIFIAMSIARMILKIIRCQTCRLAAKSIEISIDFTM
Ga0310697_100974242	3300032030	Rumen	MMAKRRKAFRRAVLRLSAAVWLRRHIFIAMIIARMIYKIIRCQTCRLAAKSIESSIDFAM
Ga0310697_101653661	3300032030	Rumen	STCFFLRLFFYNDYMMAKSRQAFRRAALLRSKTASLFCHIYIAMNIGRMIWRIIRCQTCRLAATSIEYSIDVASR
Ga0310697_105708421	3300032030	Rumen	CFDNEYRMAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFAIR
Ga0310697_108761472	3300032030	Rumen	MMAKSQRAFRRAALPRSKTARLFCHILIAMSIGRMIQRIIRCQTCRLAAKSIETSIDFAIRRS
Ga0310697_114313561	3300032030	Rumen	MAKSIKAFRRAALRRSKTALLFCPIFIAMSIGRMIHGIIRCQTRRLAAKSIESSIDFAIR
Ga0326512_112948271	3300032038	Rumen	MAKSQKAFRRATLWRSKTAQLFCRIFIAMSIGRMIQGIIRCQTCRLAAKSIESSIDFANR
Ga0310690_112911901	3300033463	Rumen	MAKSQRVFRRAALRRSKTAVLFCQLFIAMSIGRMIQRIIRCQTCRLAAKTIECSIVFAIR
Ga0310690_113092053	3300033463	Rumen	MLSPALRYQRISYYNDYMMAKRRKAFRRAALRLSKTATLFCHIFIEMSIGRMIFQIIRCQTCRLAAKTIEDSIVFAIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093041

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences