NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025203

3300025203: Marine microbial communities from the Deep Atlantic Ocean - MP0627 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025203 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054575 | Ga0208836
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0627 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56914256
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA0051
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Atlantic Ocean
CoordinatesLat. (o)-28.62Long. (o)-11.8Alt. (m)N/ADepth (m)3850.45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002753Metagenome / Metatranscriptome532Y
F037770Metagenome167Y
F041257Metagenome / Metatranscriptome160N
F052659Metagenome / Metatranscriptome142N
F071317Metagenome / Metatranscriptome122N
F076171Metagenome118N
F076187Metagenome118Y
F082562Metagenome113N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208836_100451All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA0054632Open in IMG/M
Ga0208836_105331Not Available1505Open in IMG/M
Ga0208836_105525All Organisms → cellular organisms → Bacteria1479Open in IMG/M
Ga0208836_109185Not Available1121Open in IMG/M
Ga0208836_111855Not Available973Open in IMG/M
Ga0208836_117972All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium760Open in IMG/M
Ga0208836_127908Not Available576Open in IMG/M
Ga0208836_133030All Organisms → cellular organisms → Eukaryota513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208836_100451Ga0208836_1004514F052659MLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLEAQERNLTIEDLNQSIRSKWVILWAEV
Ga0208836_105331Ga0208836_1053311F076187SLAITHFFEFISTEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVP
Ga0208836_105525Ga0208836_1055252F076171MADLKEDHKHPFNSRLEKFRNHVDLKSKKAFYQLAKIDSSQFFRVINGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208836_109185Ga0208836_1091852F041257MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRADRFYPWEYGEE
Ga0208836_111855Ga0208836_1118552F071317MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKPELKSSDSISQRFITDLDIFKIETNYVTSFGKYDPGPITFLNLPLLI
Ga0208836_117972Ga0208836_1179721F082562ALVMNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKI
Ga0208836_127908Ga0208836_1279082F037770KASRPLAFNADTMVDLPEPGMPVRQTISFAKMKLFTDSSL
Ga0208836_133030Ga0208836_1330301F002753AVDIESVNNTVSDRFTPAVFEIESVNDTVSDRFTAAAVDIESVNNTVSDRFTAADFAIESVNDTDSDRFTPADFAIESVNDTDSVRFTPSVFETESVKLTVSDRFTPAAFETESVKLTVSDRFTPPVFEIESVNDTVSDRFTPAVFEIESVNDTVSDRFTPAAVDIESVN
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