NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026782

3300026782: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026782 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072083 | Ga0207595
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24864771
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus1
All Organisms → cellular organisms → Archaea5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium1
All Organisms → cellular organisms → Bacteria1
Not Available6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 38431
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F002896Metagenome / Metatranscriptome522N
F017423Metagenome / Metatranscriptome241N
F017693Metagenome / Metatranscriptome239Y
F019548Metagenome / Metatranscriptome229N
F023901Metagenome / Metatranscriptome208N
F030869Metagenome / Metatranscriptome184N
F031960Metagenome / Metatranscriptome181Y
F032670Metagenome / Metatranscriptome179N
F041834Metagenome159Y
F048144Metagenome148N
F049078Metagenome / Metatranscriptome147Y
F064047Metagenome / Metatranscriptome129Y
F081905Metagenome114Y
F082326Metagenome113N
F089138Metagenome109N
F101715Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207595_100203All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus1392Open in IMG/M
Ga0207595_100225All Organisms → cellular organisms → Archaea1361Open in IMG/M
Ga0207595_100246All Organisms → cellular organisms → Archaea1323Open in IMG/M
Ga0207595_100553All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1046Open in IMG/M
Ga0207595_101125All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium842Open in IMG/M
Ga0207595_101723All Organisms → cellular organisms → Bacteria737Open in IMG/M
Ga0207595_101866Not Available718Open in IMG/M
Ga0207595_101979All Organisms → cellular organisms → Archaea705Open in IMG/M
Ga0207595_102069All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843695Open in IMG/M
Ga0207595_102117Not Available689Open in IMG/M
Ga0207595_102312Not Available669Open in IMG/M
Ga0207595_102350Not Available665Open in IMG/M
Ga0207595_102958All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria617Open in IMG/M
Ga0207595_103696Not Available573Open in IMG/M
Ga0207595_103960Not Available560Open in IMG/M
Ga0207595_104022All Organisms → cellular organisms → Archaea557Open in IMG/M
Ga0207595_104523All Organisms → cellular organisms → Archaea536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207595_100203Ga0207595_1002033F032670MKCGICKEEIIKEKRREHLRYHKLDDTLVEWIIETDDDLISSY
Ga0207595_100225Ga0207595_1002251F019548NPSKKEIYKILERFTSQKGGILIILHNSFSSDSKPPQEQTSVVRDDERKSAIFEINFGTVAGLSMLCECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYDDGLKSAPVEQSELVHRVNQAIDKCLEYMLNSVELDKKVYVDASDRMSGYVKLTRIGEHIREIYPDLFIDNNTKSE
Ga0207595_100246Ga0207595_1002461F023901NEQGQTCEGGVPLDPKKFGGYEFAINTKGWDAKREPTHNCHDQHKSGSIPTNLENYKSVRLRQTVKDELGKVHQIGEIDYMDGNGFHKVMDIFDSSPKPWMVDRNLYETKSYFWIRNNGSGYITVRDVSLEILS
Ga0207595_100553Ga0207595_1005532F089138MIKEGMEKAQIAAVLQGYAYDINRISALMPDGGTAKDAQSRLKQLKDAIHSDYKHRHAIVRSTQLTPLEQANLARTIRDVFFALQAIGVNTNPGREWRNALYGADMEIQRYVAELRGPSVEADGEDSDD
Ga0207595_101125Ga0207595_1011251F049078MKVHVKQSLKTDVTSALKLCTDQKRQEAVYAKLPGSNVHIKREGKAPNARLRVSRTMPANPPAAIKRLVPATNEVSHTEAWRAD
Ga0207595_101723Ga0207595_1017232F000268KASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207595_101866Ga0207595_1018661F081905MAIISGRNGQVLWDPTGGATAVAILSLNAFTADFKTEFEDVTTWGSVNREYLPGMKDSSGTLGGFFNSEELALFEAAEQDTPGLLKLVPSSTEPLVFWSGPAYLDASIDASLSAPKLTGTWKAAGPFLLNGGVLSATAAAARAKREALQRPRTAA
Ga0207595_101979Ga0207595_1019792F002896YVIKTIYGMGKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDKNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH
Ga0207595_102069Ga0207595_1020691F064047MTLMKSSRAGLLALAFGILLGLFLSVASYDVSYAQAQAPAAAPAA
Ga0207595_102117Ga0207595_1021171F101715MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAM
Ga0207595_102312Ga0207595_1023122F082326MAANKVELSPRYVAFRTMQNWVEVAVIARIESHRSGRVWGYWFSKHSPEGHFKEVPVGRVVALVSDKDADEFIRLIRGGRELPAEFVQRLHVIAD
Ga0207595_102350Ga0207595_1023501F048144MALPSSYYSSDNELHEKLKWSFSCAIDKSEFLKQSKDIKTIEGWYRQAKKTSNNISNPSLVSGEMIKELLNHVYPHYTNIIIEKTDINIKSTDGGVQSDLDLGIVTMRPYIEFVKIVNGESMPPSKFTFQLDIRTYISIFKAVNNSASENIELKKLGIELEISLLHMPYFYLSEPMKLTTKTFEIENIRLPRK
Ga0207595_102958Ga0207595_1029581F017693MAAEKNFLGFVDTGREIRRPPLVGMQFLHQRAMRAADVVSGRAGLQAKDLIGLLFRHFAGTRR
Ga0207595_103696Ga0207595_1036961F030869MAVTVSHAAGQERYEVREILEGRAFGPEVRHECRDYVQAVEYAFEFLQRRDPGREGIVSALEVVKVDGYRRETVWSYDHAHETTRFDPVRKWGFDVTRTW
Ga0207595_103960Ga0207595_1039601F031960TADPDAPDADSFSNKDYEFYALKAFITLTRKSHGVVVKTYNACRAE
Ga0207595_104022Ga0207595_1040221F017423SEKYQIAFQYPSDWIIKEKSNKLEEGTEIDVSNKKIGDGKIGIHFYDDLLEGFGSTDLEIAFSDFYKHRITDDLKFEYKTIQPPSLLEIDGHKTGSFHIMFSQKDEIDPISGEVQYWITFVGENGYMIEFLSIPENFDTPDNTEMRDRFISSINFLGLSNTTDTRGRISSVAMSN
Ga0207595_104523Ga0207595_1045231F041834IVATGDKYVNDYLIKPGNRSGFDIFLDETLPGKSKYTLTTSFEKSEDDKPEVLQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVTDTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEYSLITDNGQNNTISQQ
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