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Sample 3300029387
3300029387: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_2_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029387 Open in IMG/M GOLD Reference Gs0133117 | Gp0283155 | Ga0243994 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_2_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 198133928 Sequencing Scaffolds 3 Novel Protein Genes 5 Associated Families 5
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 2 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243994_100216 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 81215 Open in IMG/M Ga0243994_134250 All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes 839 Open in IMG/M Ga0243994_151817 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 540 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243994_100216 Ga0243994_10021662 F026489 LFVLRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF Ga0243994_100216 Ga0243994_10021668 F090514 MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG Ga0243994_127099 Ga0243994_1270991 F067844 MNTLAAETASAWYLILNRKLQTLPIYKAQLSSPLPR Ga0243994_134250 Ga0243994_1342501 F076064 LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKR Ga0243994_151817 Ga0243994_1518171 F078693 MVLAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
