Sample 3300029417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300029417

3300029417: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-84_Run4

Overview

Basic Information
IMG/M Taxon OID	3300029417 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133112 \| Gp0282553 \| Ga0243409
Sample Name	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-84_Run4
Sequencing Status	Permanent Draft
Sequencing Center	Zhejiang University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	190140717
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076064	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243409_101077	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	22654	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243409_101077	Ga0243409_10107716	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVTLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNEVKRPPRPVLKFY

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