Basic Information | |
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IMG/M Taxon OID | 3300029565 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133130 | Gp0283484 | Ga0244861 |
Sample Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022006-90 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 178492483 |
Sequencing Scaffolds | 15 |
Novel Protein Genes | 20 |
Associated Families | 18 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. TF12-31AT | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | China: Shanghai | |||||||
Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F032286 | Metagenome / Metatranscriptome | 180 | Y |
F039198 | Metagenome | 164 | Y |
F042095 | Metagenome | 159 | N |
F043945 | Metagenome | 155 | N |
F047755 | Metagenome | 149 | Y |
F058555 | Metagenome | 135 | N |
F064725 | Metagenome | 128 | N |
F070133 | Metagenome | 123 | N |
F073656 | Metagenome | 120 | N |
F075481 | Metagenome | 119 | N |
F076064 | Metagenome | 118 | N |
F082887 | Metagenome / Metatranscriptome | 113 | Y |
F084124 | Metagenome | 112 | Y |
F087213 | Metagenome | 110 | N |
F089590 | Metagenome | 109 | N |
F090514 | Metagenome | 108 | N |
F090515 | Metagenome | 108 | N |
F093883 | Metagenome | 106 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0244861_100043 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae | 155428 | Open in IMG/M |
Ga0244861_101947 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 13809 | Open in IMG/M |
Ga0244861_102630 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii | 10313 | Open in IMG/M |
Ga0244861_102645 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 10251 | Open in IMG/M |
Ga0244861_105397 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 5185 | Open in IMG/M |
Ga0244861_105523 | All Organisms → cellular organisms → Bacteria | 5054 | Open in IMG/M |
Ga0244861_106312 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 4448 | Open in IMG/M |
Ga0244861_108568 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3339 | Open in IMG/M |
Ga0244861_109494 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3032 | Open in IMG/M |
Ga0244861_111455 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 2531 | Open in IMG/M |
Ga0244861_112498 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2331 | Open in IMG/M |
Ga0244861_118483 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. TF12-31AT | 1586 | Open in IMG/M |
Ga0244861_118503 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1584 | Open in IMG/M |
Ga0244861_125153 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1143 | Open in IMG/M |
Ga0244861_152110 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 529 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0244861_100043 | Ga0244861_100043201 | F064725 | VIQLAREGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLMQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI |
Ga0244861_100043 | Ga0244861_10004323 | F075481 | MMRLRISLRAIFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK |
Ga0244861_100043 | Ga0244861_10004324 | F089590 | MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS |
Ga0244861_100043 | Ga0244861_10004326 | F042095 | MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNMGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLKMLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWASGERGTGWNDDNMSGRGLEHLTGLIAVNSNSLRMDKLPDYIYEMRAITWFNVNASTHSQQRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE |
Ga0244861_100043 | Ga0244861_10004340 | F093883 | MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYDLLMKQYNEFKDMKANATGKTKADE |
Ga0244861_100043 | Ga0244861_10004345 | F058555 | METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGLEMSKAG |
Ga0244861_101947 | Ga0244861_1019473 | F047755 | MESEKVKHLIDMINEMDIKDKLRLAICMSQSQWYGLIYNTKENYEKFDTMLKEVDEEYRTTLIYFGQNKYFNINFVMAKLMEMEQADRNKIALYLFNSIKNQ |
Ga0244861_102630 | Ga0244861_1026308 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY |
Ga0244861_102645 | Ga0244861_1026458 | F032286 | MVKWVCQIVTPVRHRTLIFDVRFFAGNAADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPK |
Ga0244861_105397 | Ga0244861_1053971 | F084124 | LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTATLFATEELLYRKIIMGAAQTRNPLKRVDLNFEFIKLNFVC |
Ga0244861_105523 | Ga0244861_1055237 | F082887 | MEKIKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAISNKEE |
Ga0244861_106312 | Ga0244861_1063123 | F070133 | MKRLLGLLLAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIGQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE |
Ga0244861_108568 | Ga0244861_1085686 | F082887 | MEKIKTIAKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISSREKK |
Ga0244861_109494 | Ga0244861_1094941 | F090514 | MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPA |
Ga0244861_111455 | Ga0244861_1114552 | F043945 | ALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFSLEDEEDSHLMPDMPGFFRWSAESSKYERVLYDGKELTTVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARVYLYGGVE |
Ga0244861_112498 | Ga0244861_1124982 | F039198 | MQITNTEIQGTKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC |
Ga0244861_118483 | Ga0244861_1184831 | F090515 | VTTCCKAGPKAALQGTAPKRVACLEFAGGEKRKTNIAADYAVKVPAFTALL |
Ga0244861_118503 | Ga0244861_1185031 | F032286 | VTPVRHRALIFDARLSTGNTADDVLVTGSTFRFCRLMCLCVKRRNIILNGKRRSLLNSTLFLADNHTRQKAISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQLSTSHESPSQLRMKH |
Ga0244861_125153 | Ga0244861_1251531 | F073656 | MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEG |
Ga0244861_152110 | Ga0244861_1521101 | F087213 | GAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV |
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