Sample 3300032789

Overview

Basic Information
IMG/M Taxon OID	3300032789 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128851 \| Gp0330579 \| Ga0314725
Sample Name	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	63288639
Sequencing Scaffolds	47
Novel Protein Genes	56
Associated Families	45

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	5
Not Available	20
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	6
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.3956	Long. (^o)	-85.372	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y
F000459	Metagenome / Metatranscriptome	1109	Y
F000927	Metagenome / Metatranscriptome	831	Y
F001705	Metagenome / Metatranscriptome	648	Y
F010664	Metagenome / Metatranscriptome	300	Y
F012944	Metagenome / Metatranscriptome	275	Y
F013050	Metagenome / Metatranscriptome	275	Y
F014095	Metagenome / Metatranscriptome	265	Y
F014470	Metatranscriptome	262	Y
F016911	Metagenome / Metatranscriptome	243	Y
F018302	Metagenome / Metatranscriptome	235	Y
F020484	Metagenome / Metatranscriptome	223	Y
F023769	Metagenome / Metatranscriptome	208	Y
F024696	Metagenome / Metatranscriptome	204	Y
F025200	Metagenome / Metatranscriptome	202	Y
F026180	Metagenome / Metatranscriptome	198	Y
F026461	Metagenome / Metatranscriptome	197	Y
F028072	Metagenome / Metatranscriptome	192	N
F029306	Metagenome / Metatranscriptome	188	Y
F030332	Metagenome / Metatranscriptome	185	Y
F030953	Metatranscriptome	183	N
F032517	Metagenome / Metatranscriptome	179	Y
F032897	Metagenome / Metatranscriptome	178	Y
F033278	Metagenome / Metatranscriptome	177	Y
F035610	Metagenome / Metatranscriptome	171	Y
F036567	Metagenome / Metatranscriptome	169	Y
F037522	Metagenome / Metatranscriptome	167	Y
F038940	Metagenome / Metatranscriptome	164	Y
F042357	Metagenome / Metatranscriptome	158	Y
F049431	Metagenome / Metatranscriptome	146	N
F053757	Metagenome / Metatranscriptome	140	Y
F055385	Metagenome / Metatranscriptome	138	Y
F056280	Metagenome / Metatranscriptome	137	Y
F057814	Metagenome / Metatranscriptome	135	Y
F067332	Metagenome / Metatranscriptome	125	N
F068339	Metagenome / Metatranscriptome	124	Y
F069562	Metagenome / Metatranscriptome	123	Y
F076725	Metagenome / Metatranscriptome	117	Y
F084981	Metagenome / Metatranscriptome	111	Y
F094644	Metagenome / Metatranscriptome	105	N
F096411	Metagenome / Metatranscriptome	104	Y
F096451	Metagenome / Metatranscriptome	104	Y
F100267	Metagenome / Metatranscriptome	102	N
F102251	Metagenome / Metatranscriptome	101	Y
F104115	Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314725_1000368	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3031	Open in IMG/M
Ga0314725_1000730	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	2545	Open in IMG/M
Ga0314725_1001042	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	2317	Open in IMG/M
Ga0314725_1002050	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1933	Open in IMG/M
Ga0314725_1002494	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1837	Open in IMG/M
Ga0314725_1002737	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1791	Open in IMG/M
Ga0314725_1003706	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1631	Open in IMG/M
Ga0314725_1004456	Not Available	1533	Open in IMG/M
Ga0314725_1004579	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	1522	Open in IMG/M
Ga0314725_1005777	Not Available	1401	Open in IMG/M
Ga0314725_1005885	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1393	Open in IMG/M
Ga0314725_1006203	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	1366	Open in IMG/M
Ga0314725_1008700	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1200	Open in IMG/M
Ga0314725_1008735	Not Available	1199	Open in IMG/M
Ga0314725_1011808	Not Available	1054	Open in IMG/M
Ga0314725_1015357	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	933	Open in IMG/M
Ga0314725_1017033	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	887	Open in IMG/M
Ga0314725_1017988	Not Available	862	Open in IMG/M
Ga0314725_1020302	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	813	Open in IMG/M
Ga0314725_1020781	Not Available	804	Open in IMG/M
Ga0314725_1023303	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	757	Open in IMG/M
Ga0314725_1023669	Not Available	750	Open in IMG/M
Ga0314725_1024323	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	739	Open in IMG/M
Ga0314725_1026488	Not Available	706	Open in IMG/M
Ga0314725_1027765	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	688	Open in IMG/M
Ga0314725_1028377	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	680	Open in IMG/M
Ga0314725_1028944	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	673	Open in IMG/M
Ga0314725_1029215	Not Available	669	Open in IMG/M
Ga0314725_1030062	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	658	Open in IMG/M
Ga0314725_1030554	Not Available	652	Open in IMG/M
Ga0314725_1030766	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	649	Open in IMG/M
Ga0314725_1030896	Not Available	648	Open in IMG/M
Ga0314725_1032636	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum	628	Open in IMG/M
Ga0314725_1033315	Not Available	620	Open in IMG/M
Ga0314725_1033753	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	615	Open in IMG/M
Ga0314725_1034431	Not Available	608	Open in IMG/M
Ga0314725_1035085	Not Available	602	Open in IMG/M
Ga0314725_1036930	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	583	Open in IMG/M
Ga0314725_1037115	Not Available	582	Open in IMG/M
Ga0314725_1037705	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	576	Open in IMG/M
Ga0314725_1038742	Not Available	567	Open in IMG/M
Ga0314725_1039545	Not Available	561	Open in IMG/M
Ga0314725_1041865	Not Available	542	Open in IMG/M
Ga0314725_1043412	Not Available	530	Open in IMG/M
Ga0314725_1044605	Not Available	521	Open in IMG/M
Ga0314725_1045059	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	518	Open in IMG/M
Ga0314725_1045658	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314725_1000368	Ga0314725_10003681	F042357	MDLKPTRNSLGRNPLSDALHRNPGVVINGQGPGRHPPKGASYHDLGTMISEQGSGRHLNGALHLRPGVVKNEQGSSHFRRRVRRVRKLAEPTRIRICSWNVGSLTGKLRELV
Ga0314725_1000730	Ga0314725_10007302	F035610	MHESTIYLTTLIELFVHIDREKHSLRVLTPSETTKDKLINS
Ga0314725_1001042	Ga0314725_10010421	F013050	MSKGKQPRTRVKVPKLMLSEIKEVFIIYNQEIGLEAAIF
Ga0314725_1002050	Ga0314725_10020503	F036567	AAASSNFYPLFLSYLAPEMNTKVVPNFIGNLLAKFQPKRIGIAGENRKLQKLCFL
Ga0314725_1002494	Ga0314725_10024942	F032897	HIGVDAFFTRSHCQQNTIALQHVPSELQVADFFTKAQTQEQHRLHLLKLNASDPPLPP
Ga0314725_1002737	Ga0314725_10027373	F096411	CSQGWEARKELELLHLVAQGCHHQYEGASNGVGSKGHLMPKNGFEGFGGLAT
Ga0314725_1003706	Ga0314725_10037062	F028072	LYLRELKYSVKIEKLHYLNLEVNTGKTVSTKENINIRCRINSSEEHTWHTSHGQTNLIVDLIHNFYITWGKRQDDLELKFEKLQKEHKHLEEQYLVANKKLELALQALEESKILLGKISQNSDYIKRDISYLFNKLESTNIAEHSKEIVLSSSGILEVTRSLNSDKWKYLTASLEETSVS
Ga0314725_1004456	Ga0314725_10044561	F000927	MGSGATNFTGASTKHLLSTKIFPNFIHLYSRGDKKNKISKLLTKIKSTESYTRDMVLKFLLEPSHEINILHKNYQALYPPDKLVMQLT
Ga0314725_1004579	Ga0314725_10045791	F026461	FRVMLFFIAVKNVLKHTTLYVHCVDLLIWSPTQLDFLFYDFFVIYYDFSKLL
Ga0314725_1005777	Ga0314725_10057772	F020484	MAKTLDAARSEIRNRLQRWDKMDTTLLFGINFGRIRTRWKVKSVHFAMEQCFSTCSVLEIERKIREDEAAMGQRGIEGGDDDEKQRLGP
Ga0314725_1005885	Ga0314725_10058852	F001705	RGRPKLTWDESVKRDLKDWNISKEIALDRSAWRLAINVPES
Ga0314725_1006203	Ga0314725_10062031	F025200	LRSLHVVDDFLGHPNGAVPIPILLPNLVGNHLAIALLLDHMSGALALVLLVGLDIDERTLDGGIFLVLLIRKLLLGLRPLV
Ga0314725_1008065	Ga0314725_10080651	F030953	GSRGEAVRVSHGQMQGAYLSFPLLCLHSYCAATWAARFDKEARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTEFLKSKERWREVRHLRRGGAVTDFPGMMHMAKAVTVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRTYTPLPEPADGCVFPEEMVRITGRDPTPVEQEALRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFSYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRNWDSGFISVGD
Ga0314725_1008700	Ga0314725_10087001	F001705	RGRPKLKWDESVKRDLKDWNISKKIVLDRSAWRLAINVSEP
Ga0314725_1008735	Ga0314725_10087351	F100267	MLLNVKFSLSLRILGLDHYQFPCSCQAFAYIASRNSPFDPIHLFSRVLLNSHXFLHYNENHFFHTCLIIKYHLQFLXQFFQYMRLYISIQSCLILNTLTCHFEYHILQQALFRYGSEFFTNNTYPNSHNTHCLLSFSY
Ga0314725_1011808	Ga0314725_10118082	F076725	FSNPRGTSTLVAATKICIELLDCRTDPDPLAAGEGSGPLGTYSGERILVSWGGSEPSVAA
Ga0314725_1013011	Ga0314725_10130113	F102251	LGVQNYVKNNDAKIIITFLNMHCDVHYYTAKFGIKIQLLYEETKKTNCFMG
Ga0314725_1013980	Ga0314725_10139801	F094644	MKFIFLLXALRYQRYHSGIWHHCYCCSMPTKCSLHSGYCHTCVLRLLCNSNTWILQIXGKDIHLPFASPSSGFQQRMXYCQNHKXLFTLSFIKDLRSMAIYIRTDALECGYHFPSENDQVXQISHFNKSVIVQIHEHRNAKSNIWLNYTSNSLETSEFFGIFXNSLQQATLEKDHISMGNNIRLNTYYHMWYDVHYKNIMYLRH
Ga0314725_1015357	Ga0314725_10153571	F010664	MGDNHNNENHEALPQQPPSLAQAVAALIADRNEQTELIRQLVQAQANVGRGRHAPPPPAETDYVGFLTTQPPLFHKADDPLEADAWIRTIEDKFSILNCAEM
Ga0314725_1017033	Ga0314725_10170331	F055385	MDPFRPAPRFDGTGFQRWKVLMQAHLQATGLNVWRVVSDGMKKNGGQQEKQHDVTAKCIILSSLSDNMFNRVYSCENAKELWKTIIENHEGTDDT
Ga0314725_1017988	Ga0314725_10179881	F024696	RCIALRPLGGIYRSTWFGGQVASPRDKEGYPGITINPKLTISGVA
Ga0314725_1020302	Ga0314725_10203022	F069562	MSMGNYLSILPLIAPLLLDLLNPNLGPQLSESNAPKWLGEDVPELSSSLDILELDASSIDTVTDEVIFDV
Ga0314725_1020781	Ga0314725_10207811	F033278	MIRSNTSKYSPRGFQASSEISFLISARKSLPTSDQTFDVTF
Ga0314725_1023303	Ga0314725_10233031	F023769	LKETLLTWSMPCADLHKNAFQRSSSRVAHVTRPVDNPTSGSTVKRCRDCLRGERDTKETIHNGLLLLRVRYGLPYAELPDCGPGDLSRFLSFLLLQGKERTSVAFPRRQRPGENGLCTLQRLCRRDRWALAHGCSSIKRNLPKGCFRHTPSVFAAWEAAALSQPPPLTSGYLEHVRRVVTGIFRPGWDRNYNSFVGSHVPNPSARACKTRADVLWRRRRDEFFTATTSESVINPSELAGRYKEIRSAGKSRP
Ga0314725_1023669	Ga0314725_10236692	F026461	QQKNILKHTILYVHCVDLLIWSLTQLDFLFYNFSVIYCDFSKLI
Ga0314725_1023889	Ga0314725_10238891	F000459	VRNGVLERVDNVKRGRGRPKLTCDESVKRDLKDWNISKEIALDRSVWRLAINVPEP
Ga0314725_1024323	Ga0314725_10243231	F056280	MAFLLCYQGFPPQRFFYHRWHICRCPGGGDLGIDSDGGSRCGTFRYGVLLLT
Ga0314725_1026488	Ga0314725_10264881	F029306	MQTKLNKSKNIIIKTSHENKANKTSFAILSLSCKEFYIKPHFGQQARNLNKTLTNSKQTCEQVAPLKTTPHKESNKIWFGIFLALHK
Ga0314725_1027135	Ga0314725_10271351	F057814	MQGNKAIQQYMRNFTMIEKIGTVHLIKSYGSEGRKYPEVRRIKYLVLPKCGTKYQKVGLNTNLI
Ga0314725_1027685	Ga0314725_10276851	F057814	KTLSSFTMIEKIGAVHLIESYGGEGRKYLGVPRIKYMVLKCGIKYQKVGSNTNLI
Ga0314725_1027765	Ga0314725_10277651	F030332	MDLREQLAALFLGNAPHEDTTGTTAVEIPFYHRVAFSQSDYALSRDIVVREDVIFQVSPDLGDPCIGSFQSRWRWLREVTRILNRAHSPGRAP
Ga0314725_1028377	Ga0314725_10283771	F018302	EDVYHVSAAVRLQAAACGLLARHRLHEMRRQMHEASLTAIDLGKGGRVLAPPDGHQQSHGSAAVYMREQGVVSAVGELQLCGSGSFRFVTGEDAQFSATTFRYRPPRGRLRWSWSRLILGGRTRAPLSFRWSPWDPGGYIRAGLARGGCPPYLQESKIKSRSLFKISRDVKGLFLGVRFVSSRVIVSVIVRLQLEDELPMLLAR
Ga0314725_1028944	Ga0314725_10289441	F049431	GRINQVTILSPSAEAREQTPRRRPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETSRTSVPSASTLQLPEGGQHRASRKESPSPK
Ga0314725_1029215	Ga0314725_10292151	F035610	MHESTIYLITLLELFVHIDREKHSLRVLTPRETTND
Ga0314725_1030062	Ga0314725_10300621	F068339	SYLTTVVDESSAVAAGPLTMVADKLLAVEPMHNIYGCLPDTAEPVFDAELLAVVDVELLTMVADRSSAADLMHNIDNCQSEPMFDADKPSAVRCDNQTNEQFYKRPHL
Ga0314725_1030473	Ga0314725_10304731	F000459	VPVRSGVLKHVDKVKRPKLTWDESVKRDLKDWDISEEVGLDRSAWRLVINVPES
Ga0314725_1030554	Ga0314725_10305541	F096451	TFKDLYLYSCSVNLKKIMIIITFXNTVLDATIMHHIISCQWSMHGIASSSGIRRLLNGNASEYNIVGGLQFPLTYLPVTGTIGWLLLISLVVVFSHVTLMPRRNLDSRVRCSHMIELLGARWCLGMCDVTHCNLLLCNLTSVLTSDPYSSV
Ga0314725_1030766	Ga0314725_10307661	F053757	MASRSGTRASHNRTLAAADAGVQPNGQNPPQEEHEVSQNGGENQEVPLPPPPPLGDLSQIIHNQTLILETLANALVNKRPREQTMNDKLTAFLRTKPPTFAGSSNPLDTNDWLCVIQRKLETFECQD
Ga0314725_1030896	Ga0314725_10308961	F104115	GHKATYLVNGDDCLVSSDAYVSAESYPSGWKLNDKKTIRSEVVAEVNSTAFLSGGGKWREVRHLRRGGFQTDFKGMLHIASAVRASREWTDAFVHSRIGKKWGFLPSQLSLHPKSYPAFSRGREMWHRCYTPLPLAPSQVRSEGILGLRRALDPDERMAFTARQWSHGRDGGRKRDVYSPSVGEVRRTYAYKVVKPWSRLSFVSKLKSLKFDGYAY
Ga0314725_1032562	Ga0314725_10325621	F014470	DVFSPSCGKVRRSYHYRVRPGISYLSFVGPGKTKLSPLWEKGADWGLVPADFRSEEEERGLAKLEQFRADWDSGFIAIGD
Ga0314725_1032636	Ga0314725_10326361	F096411	QGGCSQGWEARKELESSHLGAQGCHHKYEEASNGVGSKGDMKPMIGFGGFGGLTHKLK
Ga0314725_1033315	Ga0314725_10333151	F067332	MSPSIHVYCHIIMLANFGEDEIRRACIIISSCVEFWMVFVVPPILTRSLRAYIPILKFCAALLSVQLLAIQIIFPEKFDYEKDVRNYRFTYYRNFYDISEMFRWIPRLRLAL
Ga0314725_1033753	Ga0314725_10337532	F016911	HYGYLVLKMPSPAGVLTVQGDRTAAVAAVERLHALAAEAARSEEDPSTSQPKAPAKAPKVQPSDPDHVPVKTVQIGADSTRTTRIAGNLEEK
Ga0314725_1034431	Ga0314725_10344311	F000255	MGRIGCIRCEKSQREFAARTFALIALVHPVLHRVSCSYETIPNAPKHYETHQNMSLGSNGVEQVCSLRKITT
Ga0314725_1035085	Ga0314725_10350851	F026180	SGATVQGGSKKKKNAHGNRPHPQGGNGGSCLIHPTARHSATDCREIQKLVRRVSGRREQSSNDGSPPPRQRSGNEKASDSETAVGEKELGYQSPAQELKGVYSHDNSGSDNEERRKKLYVMYGGSWELVSRRDVKTLRREVLSVRPGVPKAAPHHRWMNTTISFEPSDCPENLAGAGVLPLVTAPVIANIRLYHVLIDGG
Ga0314725_1036930	Ga0314725_10369301	F014095	CKICEMLHSLDCFVDPVSSGLIRILPDSTAGLLRFKCVLTLVAVSVMVSALKPD
Ga0314725_1037115	Ga0314725_10371151	F014095	MLHSLDCFVDPVSSGLIGSLPDSTAGLLRFKCVLTLIVVL
Ga0314725_1037705	Ga0314725_10377051	F012944	LGSTRTQIDLKLISTWIGTPLAQPLFGLRNSSSTYKQMIRSIYENSLDHLLCGKNHSVTASREAPIFDIYPDPVESSQDSLDFITNALVKIQLESCESHTLAELLDNLRKVASIDDLPFQHSTPLVTERETRSGGTILADYESDMESFSPERLVPVIIQQPGGAPSQHDPNEALDQISEDNLTLDAPQDEDE
Ga0314725_1038742	Ga0314725_10387422	F084981	SSSGAAHLAPDTQQCPYGTLRARPLGPRLYELLLLLWTCEAPVAGDLLASSVQCDARSLVKTLLLGTSAECGQNVVESVTPVCPAPATAQTALSLSLNLHLTLQLKLTGLTLLLPLSWLWWPWHL
Ga0314725_1039545	Ga0314725_10395451	F038940	MNSDIFTANYGVKQSQFTKPTPEPRASDASDPEESNEPFDPASRGWLL
Ga0314725_1041865	Ga0314725_10418651	F067332	MPPSIHVYCHIIMLANFGEDEIRRACIIISSCVEFWVVFLVHPILTRSLRAYIAVLKFCAALLSIQLLAIQIIFLEKFDYEKDMRNYRFTYYRNFNDLRGMFIWISRLNLALDPV
Ga0314725_1043412	Ga0314725_10434121	F020484	MAKTLDAARSEIRNRLQRWDKMDITLLFGINFERIKTRWKEKFVHFAMEQCFSTGSVLKIERKIHEDEVAMGQRGIEGGDDDVK
Ga0314725_1044605	Ga0314725_10446051	F076725	CLCVKVKLRTSILGVFTFLTPAGTSTLVATTKICIELLDCRTDPDPLAAGEGSGPLRTYSGERELVSRGGPEPV
Ga0314725_1045059	Ga0314725_10450591	F032517	SSFDKIINPYSEFLGLYGGGADDLVERRGGGGIPSVNLMEELLGSLIPPRSNMSLLGAGLSSSMLRGDSETECLREELADASDVDERVLLLPAMNFMRPLMVTPCCTHSKTNTPGVSCRRENNISKSGAN
Ga0314725_1045514	Ga0314725_10455141	F000459	RGRGRPKLTWDESVKRDLKDWNISKEIVLDRSAWRVAINVPEP
Ga0314725_1045658	Ga0314725_10456581	F037522	LSRGPVLHPNLPVDRVTRMKFHMAQDSYDPLFVVNIVVWVLVVILAIVALHCPLPRRVVW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032789: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences