NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033002

3300033002: Soil microbial community from agricultural field in Dibrughar, Assam, India - D1



Overview

Basic Information
IMG/M Taxon OID3300033002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136105 | Gp0354679 | Ga0346503
Sample NameSoil microbial community from agricultural field in Dibrughar, Assam, India - D1
Sequencing StatusFinished
Sequencing CenterEurofins Genomics India Pvt Ltd.
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size236084767
Sequencing Scaffolds42
Novel Protein Genes44
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria7
Not Available10
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCrude Oil Contaminated Agricultural Soil Mecrobial Communities From Various Regions In India
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Contaminated → Soil → Crude Oil Contaminated Agricultural Soil Mecrobial Communities From Various Regions In India

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationDibrughar, Assam, India
CoordinatesLat. (o)26.2006043Long. (o)92.9375739Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001234Metagenome / Metatranscriptome741Y
F001946Metagenome / Metatranscriptome613Y
F002388Metagenome / Metatranscriptome565Y
F002464Metagenome / Metatranscriptome557Y
F002998Metagenome / Metatranscriptome514Y
F006358Metagenome / Metatranscriptome375Y
F007999Metagenome341Y
F009471Metagenome / Metatranscriptome317Y
F011110Metagenome / Metatranscriptome295Y
F011112Metagenome / Metatranscriptome295Y
F011188Metagenome / Metatranscriptome294Y
F012150Metagenome / Metatranscriptome283Y
F013948Metagenome / Metatranscriptome267Y
F017625Metagenome / Metatranscriptome239Y
F017992Metagenome / Metatranscriptome237Y
F020218Metagenome / Metatranscriptome225Y
F021612Metagenome / Metatranscriptome218Y
F022165Metagenome / Metatranscriptome215Y
F022487Metagenome / Metatranscriptome214Y
F023385Metagenome / Metatranscriptome210Y
F026140Metagenome / Metatranscriptome199Y
F028447Metagenome / Metatranscriptome191Y
F042304Metagenome / Metatranscriptome158Y
F045781Metagenome / Metatranscriptome152N
F047189Metagenome / Metatranscriptome150N
F049889Metagenome / Metatranscriptome146Y
F054771Metagenome139Y
F055628Metagenome / Metatranscriptome138Y
F059904Metagenome133Y
F063927Metagenome129Y
F066732Metagenome / Metatranscriptome126Y
F068018Metagenome / Metatranscriptome125Y
F071788Metagenome / Metatranscriptome122Y
F079734Metagenome115Y
F087658Metagenome / Metatranscriptome110Y
F087914Metagenome / Metatranscriptome110N
F088986Metagenome109Y
F090719Metagenome / Metatranscriptome108Y
F091988Metagenome / Metatranscriptome107N
F098120Metagenome / Metatranscriptome104Y
F101683Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0346503_1002850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae33728Open in IMG/M
Ga0346503_1011194All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
Ga0346503_1024228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium591Open in IMG/M
Ga0346503_1025129All Organisms → cellular organisms → Bacteria → Terrabacteria group2064Open in IMG/M
Ga0346503_1025989All Organisms → cellular organisms → Bacteria2920Open in IMG/M
Ga0346503_1031138Not Available648Open in IMG/M
Ga0346503_1034028All Organisms → cellular organisms → Bacteria4097Open in IMG/M
Ga0346503_1036057All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis8657Open in IMG/M
Ga0346503_1043432All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2381Open in IMG/M
Ga0346503_1045003Not Available1060Open in IMG/M
Ga0346503_1049145Not Available3746Open in IMG/M
Ga0346503_1053282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1029Open in IMG/M
Ga0346503_1055183All Organisms → cellular organisms → Bacteria710Open in IMG/M
Ga0346503_1056579All Organisms → Viruses → Predicted Viral1868Open in IMG/M
Ga0346503_1074066All Organisms → cellular organisms → Bacteria1667Open in IMG/M
Ga0346503_1080632All Organisms → cellular organisms → Bacteria → Acidobacteria753Open in IMG/M
Ga0346503_1086083All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia717Open in IMG/M
Ga0346503_1092973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium1859Open in IMG/M
Ga0346503_1095033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae2029Open in IMG/M
Ga0346503_1114935Not Available642Open in IMG/M
Ga0346503_1122495All Organisms → cellular organisms → Bacteria693Open in IMG/M
Ga0346503_1126065All Organisms → cellular organisms → Bacteria → Acidobacteria830Open in IMG/M
Ga0346503_1128949Not Available1068Open in IMG/M
Ga0346503_1136745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1371Open in IMG/M
Ga0346503_1143505Not Available785Open in IMG/M
Ga0346503_1144283All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
Ga0346503_1149364All Organisms → cellular organisms → Bacteria → Proteobacteria602Open in IMG/M
Ga0346503_1150376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1840Open in IMG/M
Ga0346503_1151090All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa1171Open in IMG/M
Ga0346503_1154240Not Available515Open in IMG/M
Ga0346503_1162392All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium1005Open in IMG/M
Ga0346503_1163028Not Available685Open in IMG/M
Ga0346503_1164227All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium502Open in IMG/M
Ga0346503_1165504All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium752Open in IMG/M
Ga0346503_1174219All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria621Open in IMG/M
Ga0346503_1175062Not Available702Open in IMG/M
Ga0346503_1178569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi638Open in IMG/M
Ga0346503_1180403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi508Open in IMG/M
Ga0346503_1182382Not Available584Open in IMG/M
Ga0346503_1182465All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium572Open in IMG/M
Ga0346503_1182852All Organisms → cellular organisms → Bacteria529Open in IMG/M
Ga0346503_1183601All Organisms → cellular organisms → Bacteria539Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0346503_1002850Ga0346503_100285019F017992MPAWDESPPPVRVEVTAQFLAENQAKRRAYEERRRMWTAAFHPARPRAQPLSSGRSRGKIHDPRQGKFDL
Ga0346503_1011194Ga0346503_10111941F087914TMGEVIHVAFGTEREWEQTHEKTVDGLVTIGSLFGDDESLMRLKADCVYHVLREIVEEVPSVQITTKLPENLTPEQLGALTRVIKEAALKGI
Ga0346503_1024228Ga0346503_10242281F002388DDQVARAAIVKVASYYARLAQHRTPAEMEALIWQHDSTDGAGHGPSCAAFASMTLQLGAQLAGRESWVTGGSTYPWPLHDWVDARVGPNPGSLSITSVLQDAQAHSRWHALGDGYRPLPGDWVLFGNHVEVVTGYAGGVLSTIGGDSLPNFSVNRHEYSGPLGPEGVQGFVSNGDLPAATPHGTPGTGPAPGTRPEP
Ga0346503_1025129Ga0346503_10251292F011188VETYNIYMDETPSAGLDDEEQGVEVEFRVVPNSSDDGDPENNAVLAGLDLVDLINLRDALQQEIDNYALTALEAEALQAEGDGLEEE
Ga0346503_1025989Ga0346503_10259894F022487MPIRGSPNGAGHLRPQAGRDRPESVVAINRNGWSQSIGIAGRDHPERASKRHQTAFAE
Ga0346503_1028702Ga0346503_10287022F047189VAGQGPLLTKRESAAYRPVLQGKPVRRRLAFDATFAAQSTEIIDNLVREDWLMKLPRGQAFLYASGHTYKTRFPLLPEPMYRFPLED
Ga0346503_1031138Ga0346503_10311381F066732MSVADTTPEFAATLHTNIVTQHLLGRRTDKDEADMNFLSRLKLWQKLAVLVVAMAIPSALLGVFYLGGANSQVALAKDEIEGAKYVQALGGMLAEAANHRSRVFAVLTGDAAGRDQVSASESEMQRHIDAVDASDSQVGARFKVSEGWSAIKSDWDRFKNEGAKLSPDEAVARHNVLLDHIQKLGETVAARSGMT
Ga0346503_1034028Ga0346503_10340285F026140ILPDDARREIERRGFQILTISSENPIALRDVNALDYLCAGAHPKNCPKPSLADSVIKQIEAREKHGVTTHILAFHELTSTTAMMPQLISSLRARGYRFVTLNDYMSAVASSKLVATNTKK
Ga0346503_1036057Ga0346503_10360577F054771LADDLSLEELKRRLKEGDYLEISTGGGAYEVWAEPFATPPAVYYEGEQHPIAELDGIAQRIMDEMHRGEIRCRWVADD
Ga0346503_1043432Ga0346503_10434321F101683IKVFPHEYKRVLGVERAAEAYIPAAAVRSLMPIEQVQHG
Ga0346503_1045003Ga0346503_10450031F022165MQSHDDEVLCPLCHGHGRDRKERLVVCWRSREFEQQLQTMADEAAFAPGGGLDAVFEEAPAYSNESD
Ga0346503_1049145Ga0346503_10491452F059904MDEADRLYKKYNITEPFGDEAEGALLLIDSEKYYLLFHKDFITHNTLAHEIFHTTIRITEDRDIIDEEAQAWLAGHIASVIYRFLYKMNIKVGF
Ga0346503_1053282Ga0346503_10532821F079734MPTTRVYLQGARVTDGPPRQDDLPAERFFVPASDLQEVWVETESGAVPDVGRPVTFALVRSLGVGFERIEGTVERKQAKGPRPPVT
Ga0346503_1055183Ga0346503_10551832F006358MRMNTFSSYWLAVSSARTAVAAALAEMVATGEITEEHALELAKGYLHDNAARIYAQ
Ga0346503_1056579Ga0346503_10565793F013948MREKLKKIVAYIFRSWEDEPGYTHPRLKILPPFLLELLAYLIGLAIIYQVGVYLWSII
Ga0346503_1074066Ga0346503_10740662F028447MNDEAKHGDSKSVSDRLWVPDNPDGSGWADVDWVSAVRGSRYHYRHGPPLEEARAQQPPFYLVMTRLESPDLIPHENTYYVPREQLADFLAEISLAGGAEIIWHIEPCETPPAEARVAAVQR
Ga0346503_1080632Ga0346503_10806321F002998MSLTANRIWRQLPNEIRVAVCQIYWAEVKGAEKQLLVATLAKAKNLREIFVRKSPVERLVNWTASTLSLPDPLVDDMLKQYLLDKHRAVIVSFLELLEIPHSEGMIDEDFDYATLKNERVQEAARSLLASSDRIGAELYLKYLVLQGGPWSGIEEILPTGE
Ga0346503_1086083Ga0346503_10860832F071788MVATKRTGQRSREAHVKPKQLVGYAAIAFVLFFVIKDPAGAAHIVSNIGNFLSSVARGFSSFLDSL
Ga0346503_1092973Ga0346503_10929732F007999MPTSEERAMLEERGAKARENLVAALRECCDLADAVETFEGKELLDVLMALDSIRFVMAESSQILQGVVRGFEG
Ga0346503_1095033Ga0346503_10950333F028447MSEDHPKEDAKAVSERLWVPDNPDGSGWADVDWVSAARGSRYHYRHGPPVEEARAAQPPFYLVMTRLESPNLIPHENTYYIPREQLADFLAEISLAGGAEVIWHIEPCEHPPAEAHVTPPQP
Ga0346503_1114935Ga0346503_11149351F087658MFDPIEPMPQALYFEITLEPHLKRSGLTTGRKILFLAEVPTNNAKEASQAPDDNGAVYKAAETLAANLTCMAMTGAARQLGEDEMRISFHSLPQMSNDLKERRPDAERDGVRVWLIGARP
Ga0346503_1122495Ga0346503_11224951F090719MNEIAGRTPIDRGQGTLVAPDPIHPKIRAMEVIDTDFHFTPAWKDLHQYLTEPFRSLMWHFPLGGMEYNPEPPNEKPGEGQDTHGTASSGEDVLRILDQFGEDIVILNPGFNRAQSIFNEPMISAVASAYNDFLIERV
Ga0346503_1126065Ga0346503_11260653F088986MAYQRGSLKKVRRKEGETWMLRFRVTNAKGKRVEHNQPVGLVLM
Ga0346503_1128949Ga0346503_11289493F002464MEPELSQASHSRRWGILLVFGSLGYFLTFLLIGHVEPDAHVAAAFGIIPFAVGLGFLLDSTLIKRDLKA
Ga0346503_1136745Ga0346503_11367453F091988AQASQDTLTLTLTMSGVDYEEKVSNYRVTGFEKLVCNPYIGAKEPVAVMLQSYDVKPGDPTQVVYTYSLKGNTTSELNLTMDWTIGPCAPAFDESNVKAPRNPLLTNYHFEFNVPVK
Ga0346503_1143505Ga0346503_11435052F063927VIEQLRDSLSALSLSAVDARLENLLEHAAKAEPSYGDFLLDVLR
Ga0346503_1144283Ga0346503_11442832F023385LLRVIFAGCRKSGRLDLEAVEMAVRSAVHRAGAAAITELLQFPAPADGQRQIPCACGHSAQYQGLRSKPLLTVLGQAELSRPYYW
Ga0346503_1149364Ga0346503_11493642F012150VGYPGGKNRQVSLRPDQIPQVRKGLDTYRKIKQSLEAISELNQFLLRLDREESKQQEIQP
Ga0346503_1150376Ga0346503_11503762F017625MPRKRRSEHSGDLNDDQFLGFAKSYLSESFPNPQRIGCPEDSDLQRMAERPVEARDSVSSEHLTCCSPCFRLFMDILAGQRRTKS
Ga0346503_1151090Ga0346503_11510901F068018MTVEEVIELIEKHRDQHLRLPVGEVGDPLRWSESGLHRAMAQELDTLLDEIQGVAAGVRS
Ga0346503_1154240Ga0346503_11542401F045781MFFFQSMFQQVYNGITGSTTLTAVQSIAQGIRLLCALYGMYEAYSRGGDTRALVLTGVRYLFIGLLLTQYPNVFININNAANNL
Ga0346503_1162392Ga0346503_11623921F011112MIRQLQDLPHAAIDRATLQFLLGVGRRRAQQILAPCVTHRVGANGLADRKALILRLQRLAEGDDGYYEIERRRKVARLLDALRRDRLERPRLVVEASTQILHQEFETLPPAVHLEPGRSTIQFEQPSEALEKLLALAMAIGNDFDRFERVTAKLDQEPRGK
Ga0346503_1163028Ga0346503_11630282F001946MGSEPVGPLTEKPREWLAMPGGRIRPVVSVPGEDGVDELLAYDAWLARLRPTCHCGRPRLGSGRTCGSAECVRDLARREGL
Ga0346503_1164227Ga0346503_11642271F020218MRFSRNVIVASAIAVQCLFEGLVAAPAQAADIPDNFFMEWTYSKNCTEQHAGLAAQVASGLKFKISRDAQAADGSYVFQAENTGSQHWNTGWDGIKLQYRPGTAMQTLPADFECIPGQEASSSFLAMSNYAVATEPQYEQGSWYALARIYGRLEHIL
Ga0346503_1165504Ga0346503_11655042F009471EQDHRRRIWFFPDKFWKATKDMPKDQADHLMAEVEQYAAAGDLQALRQYPFVFVGDPYKKEKLSSSD
Ga0346503_1170979Ga0346503_11709792F042304LIAVFRAAPTPANRAKLQKYLDKRMMAVCMASEDELAFLKANQFNV
Ga0346503_1174219Ga0346503_11742191F021612MNPAGKDRNLQLVTVGIGTVLTLVMGAVLIAGFRLATQMRSNITALQSASVLQTYPATISQQFNALRDRLESRAYAGQALSDLKGTVQHFNTELASLSDSGAAHSTEL
Ga0346503_1175062Ga0346503_11750621F098120MSADTGQAGGPAPAPQAGGPAPAVASLGHWHHDVTALIGSWGWIRTLNDQLTSVLGPWRERHQ
Ga0346503_1178569Ga0346503_11785692F079734VTDGPPERDDLPAERFFVHAAELQEVWVETESGAVPDVGRPVTFALARSIGVGFERIQGTVERKLAKGPRQNAT
Ga0346503_1180403Ga0346503_11804031F011188PLDTYHNYMDETPAGGLDEDDQRVEVEFRVVPNSSDDGDPENNAVLAGLDLVDLINLRDAIQQEIDNYALTALEAEALEAGAGSPDEEE
Ga0346503_1182382Ga0346503_11823822F049889MAKPVLGFEQAVSLVGRMKAAAEGNGRFSDIVMPNGQKLRDCTFGYVAEISEAMQTMGYVMPEDSLRRA
Ga0346503_1182465Ga0346503_11824651F055628LSRPDVSGVWKGSMEGTDKRGHKWQGPAELTLNQKGDAITGTLVFTPPQAGRVQVPISSGAVSKNSLTFSGQNQFQMASIDLTFHGTVNGTALTGTADMTSRSMILGPATETTSLNLTKQ
Ga0346503_1182852Ga0346503_11828521F001234TQAMTDTPITLRTYASFEDMKADEYRYWQSRPVHERMDAIEELVQTAYELKGWKVEPDVPRLQRPFVRLPCPWR
Ga0346503_1183601Ga0346503_11836012F011110MPDKVWMKPPFGVGDPKEVDATPEVLTPLMVAGLSQCDPPADHEEVKTDVHD
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