NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033998

3300033998: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-1



Overview

Basic Information
IMG/M Taxon OID3300033998 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324323 | Ga0310133
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - M1-7-1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size203557508
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)N/ADepth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001938Metagenome / Metatranscriptome614Y
F022008Metagenome / Metatranscriptome216Y
F038199Metagenome166Y
F063614Metagenome / Metatranscriptome129Y
F066897Metagenome / Metatranscriptome126Y
F077200Metagenome / Metatranscriptome117N
F082560Metagenome113N
F087072Metagenome / Metatranscriptome110Y
F088079Metagenome / Metatranscriptome109N
F099151Metagenome / Metatranscriptome103N
F101010Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310133_000747All Organisms → cellular organisms → Bacteria32384Open in IMG/M
Ga0310133_001229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes21112Open in IMG/M
Ga0310133_001366Not Available19410Open in IMG/M
Ga0310133_002358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes11764Open in IMG/M
Ga0310133_003258All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales8580Open in IMG/M
Ga0310133_003841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales7191Open in IMG/M
Ga0310133_004965Not Available5514Open in IMG/M
Ga0310133_006523All Organisms → Viruses → Predicted Viral4168Open in IMG/M
Ga0310133_015801All Organisms → Viruses → Predicted Viral1837Open in IMG/M
Ga0310133_021227All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1411Open in IMG/M
Ga0310133_028067Not Available1086Open in IMG/M
Ga0310133_039808All Organisms → cellular organisms → Bacteria772Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310133_000747Ga0310133_000747_30002_30346F082560VSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKVKRNEVPQEMQEWLAMGATMLQAKTLYDWQKAGAIVLVATSIEDMEQKFKEGQI
Ga0310133_000747Ga0310133_000747_31628_31954F066897MSSKWFWLIIIAVVLLSAVFIWHNHTSTQDMLLKAQETIKETQEALKESQEALLKLDKIAQEIKDVSQIAEKAGDEYVKEIRFVSDDEFLDKLNTYSTVMVERVKQLE
Ga0310133_001229Ga0310133_001229_607_861F087072MKSKIFTKRIFLLELSEEELSIIAGALYCANNEDIKCFVDKYKYPCSKNTLDEVTELQERLSEEINKLIENIKLDNLFDEFEIV
Ga0310133_001366Ga0310133_001366_466_726F088079MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHICEIYKVDITFFKSNTVSTK
Ga0310133_002358Ga0310133_002358_3086_3418F101010MILFNNIYATVWSVEDKGNYVKGRISTSEKNKEGEYVNSNWFVTFVGKAKEPALALSTRDRIKIISGKISNTTTGEGKDKKSYLNVVVFDFENLSNSQNESNDNFDDLPF
Ga0310133_003258Ga0310133_003258_6444_6704F088079MLIEKAIWLENVPFRSIDEAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTKLGIFIHICEIYKVDITFFKSNVVSTK
Ga0310133_003841Ga0310133_003841_843_1247F099151MRFREETFKENGQIIKKYYIDDKEVSQDVYYSLTDELYENTKLKQEEHVDEICNCEECQYYLDLIHAIKESDYSEALEILRQEIEFRVQEAYMEGQHVLANELGNSLLKHAVKLEDELENLYENGSFDEYNEDG
Ga0310133_004965Ga0310133_004965_4266_4484F087072MKSKIFTKRMFLLELTEEELGIIAGALYCANNEDIKCFVDKYKYPCNGYSFDEVAELQEKLCEEINRLIENK
Ga0310133_006523Ga0310133_006523_232_471F063614MNRRFKKMTYKRLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV
Ga0310133_015801Ga0310133_015801_1547_1837F022008MTITEIEALREALTDLSKQLQTLSDESRTSFGRIYDRLTKIETQMSEREHQFNRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMV
Ga0310133_021227Ga0310133_021227_1161_1409F038199MEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADITALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFL
Ga0310133_028067Ga0310133_028067_1_633F077200MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQG
Ga0310133_039808Ga0310133_039808_143_322F001938MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEWKHFCPDNSFSLL
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