NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000659

7000000659: Human stool microbial communities from NIH, USA - visit 2, subject 764002286



Overview

Basic Information
IMG/M Taxon OID7000000659 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053235 | Ga0030494
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 764002286
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size115598026
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044554Metagenome154N
F062845Metagenome130N
F067845Metagenome125N
F076064Metagenome118N
F076190Metagenome118Y
F078004Metagenome117N
F082887Metagenome / Metatranscriptome113Y
F088914Metagenome109N
F089005Metagenome109N
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C5419328Not Available533Open in IMG/M
C5431171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales574Open in IMG/M
C5472250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii791Open in IMG/M
C5474550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae808Open in IMG/M
C5529845Not Available1892Open in IMG/M
C5536008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2342Open in IMG/M
C5539278Not Available2724Open in IMG/M
SRS015854_WUGC_scaffold_23528All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes500Open in IMG/M
SRS015854_WUGC_scaffold_35358Not Available2737Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C5419328C5419328__gene_128613F076190VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQRESL
C5431171C5431171__gene_133452F062845TEVTHITTRWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA
C5472250C5472250__gene_150277F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNKFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR
C5474550C5474550__gene_151192F092228DSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATK
C5529845C5529845__gene_177499F044554PAHGCAAACGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
C5536008C5536008__gene_181277F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGKFIVFSAWYAAKALEMGVK
C5539278C5539278__gene_183691F082887MEKIKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAINSKEE
SRS015854_WUGC_scaffold_23528SRS015854_WUGC_scaffold_23528__gene_38453F076064VRFAVGTNGEEGFRHHISEELKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY
SRS015854_WUGC_scaffold_31106SRS015854_WUGC_scaffold_31106__gene_52205F078004EFKISSQHNITFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
SRS015854_WUGC_scaffold_35358SRS015854_WUGC_scaffold_35358__gene_61400F089005LTKSKQRSIIAHALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI
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