UHGV-0000254 (vOTU-118873)

Viral Genome: UHGV-0000254

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0000254
vOTU ID	vOTU-118873
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_24_1920__NODE_230_length_167451_cov_15.401616_1
Associated BioSample	SAMEA4766100
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.17 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.35
Jumbo phage	No

Genome content
Genome length (bp)	27,257
GC content	43.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	561.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0000254_1	phrog_37604	92.8	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0000254_1	457412.RSAG_01109	92.8	1.47e-21	N/A	N/A
KOfam	UHGV-0000254_2	K08640	67.4	3.8e-19	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0000254_2	phrog_894	61.2	1.6e-17	endolysin	lysis
UniRef90	UHGV-0000254_2	UniRef90_UPI000836A84C	159.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0000254_2	903814.ELI_0090	72.0	0.000000000000261	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0000254_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0000254_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0000254_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000254_2	PF08291,PF01471,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_3	phrog_263	68.7	5.6e-20	holin	lysis
UniRef90	UHGV-0000254_3	UniRef90_UPI00066B9206	66.2	0.00000000000328	phage holin	N/A
eggNOG-mapper	UHGV-0000254_3	1179226.AJXO01000005_gene1879	66.2	0.000000000000592	SPP1 phage holin	N/A
Pfam	UHGV-0000254_3	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
structural_annotation	UHGV-0000254_3	PF04688	N/A	N/A	N/A	N/A
KOfam	UHGV-0000254_5	K10062	53.2	0.0000000000000016	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-0000254_5	phrog_9478	165.0	0	minor tail protein	tail
eggNOG-mapper	UHGV-0000254_5	476272.RUMHYD_02865	231.0	0	N/A	N/A
Pfam	UHGV-0000254_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0000254_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0000254_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_6	phrog_202	173.3	0	distal tail protein Dit	tail
UniRef90	UHGV-0000254_6	UniRef90_A0A3E2TS69	238.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0000254_6	1158609.I586_00093	65.1	0.0000000134	Phage tail protein	N/A
Pfam	UHGV-0000254_6	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0000254_6	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0000254_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0000254_6	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_7	phrog_5755	122.1	1.4e-40	tail length tape measure protein	tail
UniRef90	UHGV-0000254_7	UniRef90_UPI0018AA57C8	292.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0000254_7	742738.HMPREF9460_04078	256.0	0	domain protein	N/A
NCBIFam	UHGV-0000254_7	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0000254_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0000254_9	phrog_709	81.3	3e-24	N/A	unknown function
UniRef90	UHGV-0000254_9	UniRef90_K6DJ01	65.9	0.0000000000611	Prophage pi2 protein 40	N/A
structural_annotation	UHGV-0000254_9	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_10	phrog_88	113.8	1.5e-33	major tail protein	tail
UniRef90	UHGV-0000254_10	UniRef90_A0A1T5A006	138.0	6.95e-38	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0000254_10	1304866.K413DRAFT_1231	109.0	2.22e-27	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0000254_10	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-0000254_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0000254_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000254_11	1033744.CAEL01000029_gene1277	62.0	0.0000000000387	N/A	N/A
structural_annotation	UHGV-0000254_11	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000254_12	UniRef90_UPI000E201960	72.4	0.000000000000102	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0000254_12	1145276.T479_12225	67.0	0.00000000000162	N/A	N/A
Pfam	UHGV-0000254_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0000254_12	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_13	phrog_1951	72.1	6.1e-21	head-tail adaptor	connector
UniRef90	UHGV-0000254_13	UniRef90_A0A373XZI9	63.2	0.000000000104	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0000254_13	396034.A6XMK0_9CAUD	71.6	0.00000000000000804	N/A	N/A
NCBIFam	UHGV-0000254_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0000254_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_14	phrog_2550	75.4	4.4e-22	N/A	unknown function
UniRef90	UHGV-0000254_14	UniRef90_UPI0008717716	102.0	1.33e-26	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0000254_14	1226322.HMPREF1545_00117	77.8	1.23e-17	N/A	N/A
structural_annotation	UHGV-0000254_14	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_15	phrog_10	172.5	0	major head protein	head and packaging
UniRef90	UHGV-0000254_15	UniRef90_A0A8F2EZ71	464.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0000254_15	642492.Clole_0744	376.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0000254_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0000254_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0000254_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0000254_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0000254_16	K06904	153.3	1.4013e-45	N/A	N/A
PHROG	UHGV-0000254_16	phrog_80	174.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0000254_16	UniRef90_UPI0008716C68	269.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0000254_16	398512.JQKC01000009_gene450	246.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0000254_16	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0000254_16	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0000254_16	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0000254_16	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_17	phrog_12	172.0	0	portal protein	head and packaging
UniRef90	UHGV-0000254_17	UniRef90_R5VT06	462.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0000254_17	33035.JPJF01000039_gene271	402.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0000254_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0000254_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0000254_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0000254_17	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_18	phrog_9	280.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000254_18	UniRef90_R5VJG5	795.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0000254_18	491915.Aflv_0661	697.0	0	Phage Terminase	N/A
Pfam	UHGV-0000254_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0000254_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0000254_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0000254_18	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_19	phrog_361	85.2	6.8e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0000254_19	UniRef90_R5V087	134.0	2.2e-38	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0000254_19	1033744.CAEL01000029_gene1286	91.7	2.96e-22	Phage terminase, small subunit	N/A
Pfam	UHGV-0000254_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0000254_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_22	phrog_119	62.1	8.6e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000254_22	UniRef90_UPI00162A9CDD	92.4	4.96e-19	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000254_22	33035.JPJF01000113_gene2099	94.0	2.13e-21	HNH nucleases	N/A
Pfam	UHGV-0000254_22	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-0000254_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0000254_24	UniRef90_UPI000377A925	57.4	0.000000194	N/A	N/A
eggNOG-mapper	UHGV-0000254_24	1219626.HMPREF1639_07135	51.2	0.00000516	sigma factor activity	N/A
COG	UHGV-0000254_24	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0000254_24	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_25	phrog_3584	175.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000254_25	936375.HMPREF1152_0670	253.0	0	N/A	N/A
structural_annotation	UHGV-0000254_25	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_26	phrog_10714	48.0	0.00000000000017	N/A	unknown function
KOfam	UHGV-0000254_29	K03111	151.0	1.12104e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000254_29	phrog_44	143.1	1.60028e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000254_29	UniRef90_A0A7C6WG20	162.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000254_29	936375.HMPREF1152_1764	159.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0000254_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000254_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000254_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000254_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000254_29	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0000254_30	K04763	184.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0000254_30	phrog_1	159.8	0	integrase	integration and excision
UniRef90	UHGV-0000254_30	UniRef90_A0A3D2TUS5	270.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0000254_30	1158607.UAU_05171	199.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0000254_30	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0000254_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000254_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0000254_30	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0000254_31	K03427	69.2	6.3e-20	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0000254_31	phrog_5696	235.8	0	N/A	unknown function
UniRef90	UHGV-0000254_31	UniRef90_A0A8E3SKS1	227.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0000254_31	452662.SJA_C1-18490	137.0	5.11e-37	N-6 DNA Methylase	N/A
PADLOC	UHGV-0000254_31	MTase_I_00005	42.5	0.0000000000085	Type I methyltransferase	RM
Pfam	UHGV-0000254_31	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0000254_31	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0000254_31	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_36	phrog_2245	65.7	6.1e-19	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0000254_36	UniRef90_A0A2S0L5I7	56.6	0.0000000305	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0000254_36	936375.HMPREF1152_1061	52.4	0.00000119	N/A	N/A
Pfam	UHGV-0000254_36	PF01503	N/A	N/A	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
structural_annotation	UHGV-0000254_36	PF12643,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0000254_40	phrog_7566	76.1	3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0000254_40	1410650.JHWL01000003_gene2846	56.6	0.0000000115	N/A	N/A
PHROG	UHGV-0000254_42	phrog_3777	67.6	7.9e-20	N/A	unknown function
UniRef90	UHGV-0000254_42	UniRef90_A0A410PX07	89.4	1.35e-20	N/A	N/A
eggNOG-mapper	UHGV-0000254_42	767817.Desgi_3545	77.8	7.42e-17	N/A	N/A
Pfam	UHGV-0000254_42	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0000254_42	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
UniRef90	UHGV-0000254_43	UniRef90_UPI00033018B4	77.4	3.06e-17	N/A	N/A
eggNOG-mapper	UHGV-0000254_43	482234.SCAZ3_03540	74.3	8.48e-17	N/A	N/A
Pfam	UHGV-0000254_43	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0000254_43	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0000254_43	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000254_44	K22300	51.3	0.000000000000026	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0000254_44	phrog_2967	51.7	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000254_44	UniRef90_A0A133YTS3	98.6	3.33e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0000254_44	411460.RUMTOR_02303	61.2	0.00000000155	helix-turn-helix	N/A
Pfam	UHGV-0000254_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000254_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000254_44	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A