UHGV-0000413 (vOTU-145360)

Viral Genome: UHGV-0000413

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0000413
vOTU ID	vOTU-145360
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_12_2311__NODE_463_length_72745_cov_8.107571_1
Associated BioSample	SAMEA4766220
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.76
Jumbo phage	No

Genome content
Genome length (bp)	29,297
GC content	62.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	95%
Average CDS length (bps)	680.42
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0000413_1	1519439.JPJG01000011_gene59	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000413_3	1519439.JPJG01000011_gene57	206.0	0	N/A	N/A
structural_annotation	UHGV-0000413_3	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0000413_5	phrog_422	108.5	6.5e-32	major head protein	head and packaging
UniRef90	UHGV-0000413_5	UniRef90_K1TJJ5	359.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0000413_5	693746.OBV_01700	509.0	0	N/A	N/A
Pfam	UHGV-0000413_5	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0000413_5	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_6	K06909	140.3	1.90002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0000413_6	phrog_979	156.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000413_6	UniRef90_A0A4D7AXL6	706.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0000413_6	693746.OBV_01690	648.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0000413_6	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0000413_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0000413_6	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000413_7	UniRef90_A0A4D7ASB8	718.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000413_7	1519439.JPJG01000011_gene54	784.0	0	N/A	N/A
structural_annotation	UHGV-0000413_7	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0000413_8	phrog_156	113.2	2.1e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-0000413_8	693746.OBV_01670	712.0	0	N/A	N/A
structural_annotation	UHGV-0000413_8	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0000413_9	phrog_17134	45.0	0.00000000000053	N/A	unknown function
eggNOG-mapper	UHGV-0000413_9	1408437.JNJN01000002_gene1389	57.0	0.00000654	N/A	N/A
PHROG	UHGV-0000413_10	phrog_4105	98.5	4.4e-29	N/A	unknown function
UniRef90	UHGV-0000413_10	UniRef90_A0A8D9UHA9	172.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0000413_10	411460.RUMTOR_01326	140.0	6.19934e-42	N/A	N/A
PHROG	UHGV-0000413_11	phrog_881	91.3	5.3e-27	holin	lysis
UniRef90	UHGV-0000413_11	UniRef90_UPI00189D3A4F	84.3	4.6e-20	phage holin	N/A
eggNOG-mapper	UHGV-0000413_11	742740.HMPREF9474_02251	82.8	3.49e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0000413_11	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0000413_11	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_12	K22519	44.0	0.000000000003	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-0000413_12	phrog_9589	79.3	1.7e-28	endolysin	lysis
UniRef90	UHGV-0000413_12	UniRef90_UPI000A02B331	167.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0000413_12	476272.RUMHYD_02876	171.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0000413_12	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0000413_12	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0000413_12	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0000413_12	PF01471,PF06940,TIGR02594,NF038080,COG3942	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000413_13	693746.OBV_01600	99.4	3.15e-20	N/A	N/A
UniRef90	UHGV-0000413_14	UniRef90_U2AS96	735.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0000413_14	693746.OBV_01590	586.0	0	N/A	N/A
Pfam	UHGV-0000413_14	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0000413_15	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
Pfam	UHGV-0000413_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0000413_16	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000413_20	UniRef90_A0A098GES5	89.4	3.39e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0000413_20	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000413_22	PF19885	N/A	N/A	N/A	N/A
PHROG	UHGV-0000413_28	phrog_1384	128.8	3.7e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0000413_28	665956.HMPREF1032_03086	273.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0000413_28	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_29	K00558	214.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0000413_29	phrog_116	255.9	0	DNA methyltransferase	other
UniRef90	UHGV-0000413_29	UniRef90_A0A350THX9	860.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0000413_29	1121334.KB911073_gene1852	650.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0000413_29	MTase_II_00164	98.9	1.2e-33	Type II methyltransferase	RM
Pfam	UHGV-0000413_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0000413_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0000413_29	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_30	K23779	42.3	8.2e-23	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
eggNOG-mapper	UHGV-0000413_30	498761.HM1_2801	63.9	0.000000000392	PFAM Helix-turn-helix	N/A
Pfam	UHGV-0000413_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0000413_30	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0000413_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000413_30	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_33	K01160	64.9	2.1e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0000413_33	phrog_34	49.6	0.000000000000078	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000413_33	UniRef90_A0A843HIU7	147.0	2.4803e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0000413_33	875454.BAEW01000002_gene491	134.0	8.2e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0000413_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0000413_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0000413_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000413_34	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_35	K03111	147.8	1.09301e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000413_35	phrog_44	151.2	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000413_35	UniRef90_A0A810QFR8	204.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000413_35	1007096.BAGW01000023_gene151	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0000413_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000413_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000413_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000413_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000413_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_36	K07455	292.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0000413_36	phrog_148	275.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000413_36	UniRef90_U2SBP2	384.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0000413_36	1226322.HMPREF1545_00015	384.0	0	RecT family	N/A
Pfam	UHGV-0000413_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0000413_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0000413_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0000413_36	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0000413_37	phrog_434	294.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000413_37	UniRef90_UPI000952E6A4	277.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0000413_37	1121344.JHZO01000003_gene985	271.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0000413_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0000413_37	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0000413_37	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0000413_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000413_39	PF12728	N/A	N/A	N/A	N/A
KOfam	UHGV-0000413_41	K07741	224.8	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0000413_41	phrog_63	182.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0000413_41	UniRef90_UPI001379CF69	353.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0000413_41	1232443.BAIA02000079_gene53	317.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0000413_41	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0000413_41	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0000413_41	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0000413_41	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A