UHGV-0000538 (vOTU-093607)

Viral Genome: UHGV-0000538

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0000538
vOTU ID	vOTU-093607
Representative Genome?	Yes
Source	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_1_1719__NODE_92_length_214967_cov_23.561948_1
Associated BioSample	SAMEA4765999
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.99 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9551
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.54
Jumbo phage	No

Genome content
Genome length (bp)	34,988
GC content	52.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	93%
Average CDS length (bps)	636.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0000538_1	phrog_15303	50.7	0.000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0000538_1	1286171.EAL2_c11300	53.9	0.0000000815	N/A	N/A
PHROG	UHGV-0000538_2	phrog_2428	102.5	2.7e-30	N/A	unknown function
UniRef90	UHGV-0000538_2	UniRef90_UPI00082E0B05	149.0	2.52234e-44	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0000538_2	431943.CKL_3230	159.0	0	N/A	N/A
dbAPIS	UHGV-0000538_2	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
KOfam	UHGV-0000538_4	K19304	111.1	1.4e-32	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0000538_4	phrog_3578	100.1	3.2e-29	metallo-endopeptidase	other
UniRef90	UHGV-0000538_4	UniRef90_A0A349HRK9	159.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0000538_4	665956.HMPREF1032_00102	117.0	1.52e-29	heme binding	N/A
Pfam	UHGV-0000538_4	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0000538_4	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0000538_4	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_7	phrog_19695	75.6	6.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0000538_7	411473.RUMCAL_00613	62.8	0.000000192	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0000538_7	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
PHROG	UHGV-0000538_8	phrog_18593	68.3	1.3e-19	N/A	unknown function
UniRef90	UHGV-0000538_8	UniRef90_A0A658JZT9	142.0	3.20001e-40	Chitinase	N/A
eggNOG-mapper	UHGV-0000538_8	552398.HMPREF0866_04507	172.0	0	N/A	N/A
Pfam	UHGV-0000538_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0000538_8	PF14600,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_9	phrog_10993	337.7	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0000538_9	UniRef90_A0A847YW55	336.0	0	Fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0000538_9	1519439.JPJG01000059_gene1944	313.0	0	N/A	N/A
Pfam	UHGV-0000538_9	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0000538_9	PF19789,PF18911,NF010681,COG1470	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000538_10	1519439.JPJG01000037_gene946	55.8	0.0000000692	COG NOG18825 non supervised orthologous group	N/A
eggNOG-mapper	UHGV-0000538_11	1120746.CCNL01000014_gene2212	60.8	0.00000000107	N/A	N/A
PHROG	UHGV-0000538_12	phrog_13879	281.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0000538_12	665956.HMPREF1032_03630	233.0	0	N/A	N/A
structural_annotation	UHGV-0000538_12	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_13	phrog_1194	68.4	9.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0000538_13	665956.HMPREF1032_03056	59.3	0.00000000218	N/A	N/A
Pfam	UHGV-0000538_13	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0000538_13	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_14	phrog_19074	105.9	3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0000538_14	1123263.AUKY01000015_gene1620	100.0	2.41e-18	Phage tail tape measure protein TP901	N/A
COG	UHGV-0000538_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0000538_15	1121333.JMLH01000047_gene1011	70.1	0.000000000000325	N/A	N/A
UniRef90	UHGV-0000538_16	UniRef90_A0A847YX95	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000538_16	1123263.AUKY01000015_gene1618	95.5	4.1e-24	N/A	N/A
Pfam	UHGV-0000538_16	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0000538_16	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_17	phrog_158	56.6	5.5e-16	major tail protein	tail
UniRef90	UHGV-0000538_17	UniRef90_UPI00189AB4AD	211.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0000538_17	1232453.BAIF02000058_gene1634	98.2	2.44e-24	N/A	N/A
structural_annotation	UHGV-0000538_17	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000538_18	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000538_19	476272.RUMHYD_01963	53.5	0.00000174	N/A	N/A
eggNOG-mapper	UHGV-0000538_20	1298920.KI911353_gene2656	81.6	4.02e-18	N/A	N/A
UniRef90	UHGV-0000538_21	UniRef90_R6N215	130.0	2.52e-37	Phage QLRG family putative DNA packaging	N/A
eggNOG-mapper	UHGV-0000538_21	1298920.KI911353_gene2658	55.1	0.0000000218	N/A	N/A
Pfam	UHGV-0000538_21	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0000538_21	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_22	phrog_544	83.4	2.8e-24	major head protein	head and packaging
UniRef90	UHGV-0000538_22	UniRef90_A0A143PAE0	72.4	0.0000000000492	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0000538_22	428127.EUBDOL_01555	248.0	0	N/A	N/A
structural_annotation	UHGV-0000538_22	PF06673,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_25	phrog_6577	45.1	0.00000000000052	N/A	unknown function
eggNOG-mapper	UHGV-0000538_25	1280689.AUJC01000007_gene3319	58.2	0.000000285	head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-0000538_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000538_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_26	phrog_64	232.9	0	portal protein	head and packaging
UniRef90	UHGV-0000538_26	UniRef90_UPI00189F3DE6	539.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0000538_26	1123263.AUKY01000015_gene1609	375.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0000538_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0000538_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_27	phrog_38	212.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000538_27	UniRef90_A0A318EQM2	459.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0000538_27	1123263.AUKY01000015_gene1608	532.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0000538_27	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0000538_27	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000538_27	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0000538_29	K14060	142.1	4.19969e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0000538_29	phrog_125	183.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_29	UniRef90_R7EUM7	276.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0000538_29	1408437.JNJN01000011_gene1119	225.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0000538_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0000538_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0000538_29	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000538_31	1235800.C819_00492	56.2	0.000000000623	N/A	N/A
KOfam	UHGV-0000538_34	K03466	175.8	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0000538_34	phrog_1358	165.0	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0000538_34	UniRef90_A0A843HSG7	166.0	0	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-0000538_34	1129368.SMIPMB4A_v3c6530	137.0	3.79e-34	Ftsk_gamma	N/A
PADLOC	UHGV-0000538_34	SspH_00004	76.7	2.1e-22	SspH	SSP
Pfam	UHGV-0000538_34	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0000538_34	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0000538_34	PF01580,MF_00350,TIGR03925,COG0433	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_35	phrog_463	98.5	4.1e-29	anti-repressor	transcription regulation
UniRef90	UHGV-0000538_35	UniRef90_UPI0011A5DE0C	90.5	3.67e-18	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0000538_35	1123263.AUKY01000072_gene2107	83.2	3.85e-16	BRO family, N-terminal domain	N/A
Pfam	UHGV-0000538_35	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0000538_35	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0000538_36	phrog_606	40.9	0.000000000016	terminase small subunit	head and packaging
UniRef90	UHGV-0000538_36	UniRef90_UPI001D08D6B6	169.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0000538_36	1415774.U728_1676	65.1	0.0000000000423	DNA-packaging protein gp3	N/A
Pfam	UHGV-0000538_36	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0000538_36	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_37	phrog_1156	313.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_37	UniRef90_H1CER1	769.0	0	Phage/plasmid primase, P4 family domain-containing protein	N/A
eggNOG-mapper	UHGV-0000538_37	431943.CKL_3236	336.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0000538_37	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0000538_37	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0000538_37	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0000538_37	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0000538_37	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0000538_37	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_40	phrog_7839	92.2	4.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0000538_40	1232453.BAIF02000057_gene1137	126.0	2.01e-35	N/A	N/A
structural_annotation	UHGV-0000538_42	PF09871,COG4014	N/A	N/A	N/A	N/A
KOfam	UHGV-0000538_43	K01160	45.7	0.0000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0000538_43	phrog_140	123.7	1.1e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_43	UniRef90_A0A2V2FY53	165.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0000538_43	428127.EUBDOL_01511	108.0	4.49e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0000538_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0000538_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0000538_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_44	phrog_11769	179.7	0	N/A	unknown function
UniRef90	UHGV-0000538_44	UniRef90_A0A315ZXT4	196.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-0000538_44	1005705.HMPREF9967_1022	162.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0000538_44	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0000538_44	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0000538_44	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0000538_45	K03111	120.9	1.7e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000538_45	phrog_44	128.6	5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_45	UniRef90_A0A7C6GL00	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000538_45	1007096.BAGW01000030_gene5	125.0	5.69e-35	Single-strand binding protein family	N/A
Pfam	UHGV-0000538_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000538_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000538_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000538_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000538_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_46	phrog_72	68.6	4.9e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_46	UniRef90_UPI001F3F3E5C	134.0	1.87e-36	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0000538_46	445972.ANACOL_01825	115.0	5.83e-30	N/A	N/A
structural_annotation	UHGV-0000538_46	PF05772	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000538_47	1122146.AUHP01000010_gene1069	50.8	0.00000534	YqaJ viral recombinase family	N/A
COG	UHGV-0000538_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0000538_48	phrog_7838	152.1	2.8026e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000538_48	UniRef90_A0A8D9UGW3	219.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0000538_48	742767.HMPREF9456_02052	173.0	0	N/A	N/A
structural_annotation	UHGV-0000538_48	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0000538_50	phrog_28990	65.3	8.4e-19	N/A	unknown function